Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Scn8a-203ENSMUST00000108908 7030 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.39
Chmp6P0C0A3 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
Chmp6P0C0A3 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Chmp6P0C0A3 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Chmp6P0C0A3 Prrx1-201ENSMUST00000027878 4952 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Gpr101-201ENSMUST00000057645 5410 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Gm14724-201ENSMUST00000118400 537 ntBASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Gm6114-201ENSMUST00000182472 968 ntBASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Mir6979-201ENSMUST00000183927 56 ntBASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Gm5733-201ENSMUST00000190232 939 ntBASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Gm38117-201ENSMUST00000194653 939 ntBASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Gm43138-201ENSMUST00000199123 708 ntBASIC12.58□□□□□ -0.4
Chmp6P0C0A3 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Gm1821-202ENSMUST00000227415 750 ntBASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Mir219a-1-201ENSMUST00000083621 110 ntBASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Gm38055-201ENSMUST00000195353 2217 ntBASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC12.58□□□□□ -0.4
Chmp6P0C0A3 Emc1-201ENSMUST00000042096 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Tfrc-201ENSMUST00000023486 4890 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 AC122291.1-201ENSMUST00000228937 5748 ntBASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Gm13461-201ENSMUST00000120980 662 ntBASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Gm23085-201ENSMUST00000157849 293 ntBASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Gm4482-201ENSMUST00000200876 742 ntBASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Abhd11os-203ENSMUST00000222613 363 ntBASIC12.57□□□□□ -0.4
Chmp6P0C0A3 AC151275.1-201ENSMUST00000224870 585 ntBASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Gm43289-201ENSMUST00000200537 1475 ntBASIC12.57□□□□□ -0.4
Chmp6P0C0A3 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Myo1h-210ENSMUST00000202006 4631 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Ctnnd1-204ENSMUST00000099941 5783 ntTSL 5 BASIC12.57□□□□□ -0.4
Chmp6P0C0A3 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 61.2 ms