Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Gm37648-201ENSMUST00000192072 2563 ntBASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 AC167565.1-201ENSMUST00000226980 1833 ntBASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Tmem19-201ENSMUST00000092170 3012 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Rps6ka1-209ENSMUST00000174481 2228 ntTSL 5 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Gm26286-201ENSMUST00000104166 134 ntBASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Gm15370-201ENSMUST00000117158 253 ntBASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Gm29164-201ENSMUST00000185454 1024 ntBASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Gm19187-201ENSMUST00000206781 892 ntBASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
Pcdh1F7BJK1 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Pcdh1F7BJK1 Tifa-205ENSMUST00000171621 2547 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Pcdh1F7BJK1 Synpr-201ENSMUST00000070323 2541 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.75
Pcdh1F7BJK1 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Pcdh1F7BJK1 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Pcdh1F7BJK1 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Poldip3-202ENSMUST00000100375 3157 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Tardbp-206ENSMUST00000105702 6425 ntTSL 5 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Usp2-203ENSMUST00000114830 2122 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Acin1-203ENSMUST00000111484 4048 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Gm5940-201ENSMUST00000117582 1068 ntBASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Gm11500-201ENSMUST00000118237 601 ntBASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Gm11222-201ENSMUST00000119005 738 ntBASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Gm6963-201ENSMUST00000147879 379 ntBASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Uba52-ps-201ENSMUST00000183770 379 ntBASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Mir8093-201ENSMUST00000185043 137 ntBASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Gm34767-201ENSMUST00000191813 1062 ntBASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 AC121960.1-201ENSMUST00000227982 564 ntBASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Gm7399-201ENSMUST00000032395 858 ntBASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Mapkap1-209ENSMUST00000147337 3111 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Kpna7-202ENSMUST00000110673 2453 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Pcdh1F7BJK1 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC10.38□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms