Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim54Q9ERP3 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.55□□□□□ -0.4
Trim54Q9ERP3 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim54Q9ERP3 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim54Q9ERP3 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Trim54Q9ERP3 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim54Q9ERP3 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim54Q9ERP3 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC12.55□□□□□ -0.4
Trim54Q9ERP3 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Trim54Q9ERP3 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trim54Q9ERP3 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Trim54Q9ERP3 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Gm3765-201ENSMUST00000130985 1447 ntBASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Gm13668-201ENSMUST00000119237 1001 ntBASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 AC164437.3-201ENSMUST00000228323 347 ntBASIC12.54□□□□□ -0.4
Trim54Q9ERP3 AC136376.2-201ENSMUST00000228819 490 ntBASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Gm23680-201ENSMUST00000083162 164 ntBASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Gm2238-201ENSMUST00000192074 3669 ntBASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Gm13347-201ENSMUST00000120298 1353 ntBASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trim54Q9ERP3 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm25766-201ENSMUST00000104101 131 ntBASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm12247-201ENSMUST00000117585 670 ntBASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm4993-201ENSMUST00000118719 1174 ntBASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm6548-201ENSMUST00000167498 1165 ntBASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Rn7s6-201ENSMUST00000175005 291 ntBASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm29410-201ENSMUST00000188383 694 ntBASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm5100-201ENSMUST00000195631 589 ntBASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Gm19166-201ENSMUST00000196041 1063 ntBASIC12.53□□□□□ -0.4
Trim54Q9ERP3 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 CT009536.2-201ENSMUST00000225370 665 ntBASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Trim54Q9ERP3 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 76.2 ms