Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 AC166359.1-201ENSMUST00000220243 1871 ntBASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm24255-201ENSMUST00000104481 128 ntBASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm14109-201ENSMUST00000118814 309 ntBASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm11960-201ENSMUST00000122068 925 ntBASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm9230-201ENSMUST00000188228 532 ntBASIC11.41□□□□□ -0.58
Lima1Q9ERG0 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm38341-201ENSMUST00000195357 515 ntBASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm38314-201ENSMUST00000195709 625 ntBASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm43758-201ENSMUST00000199500 367 ntBASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Kat6b-201ENSMUST00000069648 7649 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Tm9sf1-202ENSMUST00000120041 2164 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Adra2b-202ENSMUST00000104934 4014 ntAPPRIS ALT2 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Prr30-202ENSMUST00000187304 2104 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm15198-201ENSMUST00000117283 177 ntBASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm13326-201ENSMUST00000118730 1011 ntBASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm12164-201ENSMUST00000121695 551 ntBASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm6963-201ENSMUST00000147879 379 ntBASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm5070-201ENSMUST00000177599 862 ntBASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm38241-201ENSMUST00000192641 898 ntBASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm3961-201ENSMUST00000204425 994 ntBASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Add2-204ENSMUST00000203366 3407 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lima1Q9ERG0 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.59
Lima1Q9ERG0 Dixdc1-203ENSMUST00000117646 5719 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.59
Lima1Q9ERG0 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Lima1Q9ERG0 Gm9035-201ENSMUST00000218318 1697 ntBASIC11.4□□□□□ -0.59
Lima1Q9ERG0 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Lima1Q9ERG0 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lima1Q9ERG0 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lima1Q9ERG0 Nlrp6-201ENSMUST00000106045 3823 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Lima1Q9ERG0 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC11.39□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms