Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC12.99□□□□□ -0.33
Smc1aQ9CU62 AC122876.1-201ENSMUST00000217619 825 ntBASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Dopey2-207ENSMUST00000227156 7340 ntBASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Gm42463-201ENSMUST00000198041 4886 ntBASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Smc1aQ9CU62 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Gm5847-201ENSMUST00000178959 1595 ntBASIC12.98□□□□□ -0.33
Smc1aQ9CU62 AC124433.1-202ENSMUST00000224762 1535 ntBASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Gm6580-201ENSMUST00000117504 1357 ntBASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC12.98□□□□□ -0.33
Smc1aQ9CU62 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Gm44958-201ENSMUST00000203734 736 ntBASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Gm270-201ENSMUST00000223010 976 ntBASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 AC159195.3-201ENSMUST00000225162 2211 ntBASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Gm29100-201ENSMUST00000187564 4410 ntBASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Smc1aQ9CU62 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Gm6506-201ENSMUST00000119775 1136 ntBASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Gm9022-201ENSMUST00000182482 992 ntBASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 AC133602.1-201ENSMUST00000227510 509 ntBASIC12.97□□□□□ -0.33
Smc1aQ9CU62 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Gm10179-201ENSMUST00000086233 688 ntBASIC12.97□□□□□ -0.33
Smc1aQ9CU62 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 67.9 ms