Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Gm13600-201ENSMUST00000117949 744 ntBASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Gm45716-203ENSMUST00000153734 644 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Gm17192-201ENSMUST00000169031 511 ntBASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Gstt3-203ENSMUST00000173537 687 ntTSL 3 BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Gm42655-201ENSMUST00000202782 1134 ntBASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Gm35713-201ENSMUST00000210516 199 ntBASIC15.79■□□□□ 0.12
Usp40Q8BWR4 AC154305.2-201ENSMUST00000225813 901 ntBASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Cd2bp2-202ENSMUST00000166791 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Tcf7l2-206ENSMUST00000111652 1041 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Gm13022-201ENSMUST00000121181 285 ntBASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Usp40Q8BWR4 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Gm11801-201ENSMUST00000117807 746 ntBASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 AC238811.4-201ENSMUST00000178019 1246 ntBASIC15.77■□□□□ 0.12
Usp40Q8BWR4 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 AC238940.3-201ENSMUST00000178830 1246 ntBASIC15.77■□□□□ 0.12
Usp40Q8BWR4 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 4930422M22Rik-201ENSMUST00000191492 948 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Gm9369-201ENSMUST00000196009 733 ntBASIC15.77■□□□□ 0.12
Usp40Q8BWR4 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 4930555K19Rik-201ENSMUST00000060066 171 ntBASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Usp40Q8BWR4 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Usp40Q8BWR4 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Usp40Q8BWR4 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Usp40Q8BWR4 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Usp40Q8BWR4 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Usp40Q8BWR4 Gm15784-201ENSMUST00000120260 1462 ntBASIC15.77■□□□□ 0.11
Usp40Q8BWR4 Gm18798-201ENSMUST00000187264 1700 ntBASIC15.77■□□□□ 0.11
Usp40Q8BWR4 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC15.77■□□□□ 0.11
Usp40Q8BWR4 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Usp40Q8BWR4 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Usp40Q8BWR4 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Usp40Q8BWR4 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Usp40Q8BWR4 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm9915-201ENSMUST00000066196 1383 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Matn2-203ENSMUST00000226766 3252 ntBASIC15.76■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 83.3 ms