Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 AC165351.1-201ENSMUST00000219078 2020 ntBASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Gm11930-201ENSMUST00000117788 190 ntBASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Gm7857-201ENSMUST00000117957 358 ntBASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Gm5846-201ENSMUST00000193146 1414 ntBASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Col28a1Q2UY11 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 AC124577.2-201ENSMUST00000217413 2420 ntBASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 AC127597.1-201ENSMUST00000225697 5711 ntBASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Gm5419-201ENSMUST00000119301 527 ntBASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Gm14208-201ENSMUST00000119645 678 ntBASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Gm8908-201ENSMUST00000121633 1024 ntBASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Gm11960-201ENSMUST00000122068 925 ntBASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Gm9004-201ENSMUST00000218739 1222 ntBASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Flad1-202ENSMUST00000107426 2238 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col28a1Q2UY11 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm14005-209ENSMUST00000224993 1832 ntBASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Prss57-203ENSMUST00000169684 2841 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms