Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC13.43□□□□□ -0.26
Traf1P39428 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC13.43□□□□□ -0.26
Traf1P39428 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC13.43□□□□□ -0.26
Traf1P39428 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Traf1P39428 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC13.43□□□□□ -0.26
Traf1P39428 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
Traf1P39428 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC13.43□□□□□ -0.26
Traf1P39428 Gm42913-201ENSMUST00000197936 1853 ntBASIC13.43□□□□□ -0.26
Traf1P39428 Gm43102-201ENSMUST00000201004 2324 ntBASIC13.43□□□□□ -0.26
Traf1P39428 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Traf1P39428 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Traf1P39428 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC13.43□□□□□ -0.26
Traf1P39428 AC134869.4-202ENSMUST00000224350 837 ntBASIC13.43□□□□□ -0.26
Traf1P39428 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Traf1P39428 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC13.43□□□□□ -0.26
Traf1P39428 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC13.43□□□□□ -0.26
Traf1P39428 Gm5451-201ENSMUST00000080545 579 ntBASIC13.43□□□□□ -0.26
Traf1P39428 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Traf1P39428 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Traf1P39428 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Traf1P39428 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Traf1P39428 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Traf1P39428 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Traf1P39428 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
Traf1P39428 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Traf1P39428 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Traf1P39428 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Traf1P39428 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Traf1P39428 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Gm43984-201ENSMUST00000204572 2864 ntBASIC13.42□□□□□ -0.26
Traf1P39428 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 AC138329.2-201ENSMUST00000225579 1842 ntBASIC13.42□□□□□ -0.26
Traf1P39428 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Gm16071-201ENSMUST00000119589 793 ntBASIC13.42□□□□□ -0.26
Traf1P39428 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Gm22442-201ENSMUST00000157256 144 ntBASIC13.42□□□□□ -0.26
Traf1P39428 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC13.42□□□□□ -0.26
Traf1P39428 Gm17826-201ENSMUST00000189720 798 ntBASIC13.42□□□□□ -0.26
Traf1P39428 AC165260.2-203ENSMUST00000224237 336 ntBASIC13.42□□□□□ -0.26
Traf1P39428 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Traf1P39428 Gm4978-201ENSMUST00000071565 801 ntBASIC13.42□□□□□ -0.26
Traf1P39428 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 AC124433.1-202ENSMUST00000224762 1535 ntBASIC13.42□□□□□ -0.26
Traf1P39428 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Gm45428-201ENSMUST00000209619 1789 ntBASIC13.42□□□□□ -0.26
Traf1P39428 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Traf1P39428 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC13.42□□□□□ -0.26
Traf1P39428 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Gm43172-201ENSMUST00000202139 2137 ntBASIC13.42□□□□□ -0.26
Traf1P39428 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Traf1P39428 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Traf1P39428 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC13.41□□□□□ -0.26
Traf1P39428 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC13.41□□□□□ -0.26
Traf1P39428 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Traf1P39428 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Traf1P39428 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Traf1P39428 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
Traf1P39428 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC13.41□□□□□ -0.26
Traf1P39428 Gm18367-201ENSMUST00000176139 600 ntBASIC13.41□□□□□ -0.26
Traf1P39428 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC13.41□□□□□ -0.26
Traf1P39428 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC13.41□□□□□ -0.26
Traf1P39428 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC13.41□□□□□ -0.26
Traf1P39428 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Traf1P39428 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Kcnh7-203ENSMUST00000112454 3073 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
Traf1P39428 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
Traf1P39428 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC13.41□□□□□ -0.26
Traf1P39428 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC13.41□□□□□ -0.26
Traf1P39428 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Traf1P39428 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms