Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp4P35123 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Usp4P35123 Gm42141-201ENSMUST00000196534 2172 ntBASIC12.15□□□□□ -0.47
Usp4P35123 Gm42463-201ENSMUST00000198041 4886 ntBASIC12.15□□□□□ -0.47
Usp4P35123 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.47
Usp4P35123 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.47
Usp4P35123 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC12.14□□□□□ -0.47
Usp4P35123 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Erich3-203ENSMUST00000189969 3460 ntBASIC12.14□□□□□ -0.47
Usp4P35123 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Usp4P35123 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
Usp4P35123 Cntn4-203ENSMUST00000113258 2464 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC12.14□□□□□ -0.47
Usp4P35123 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Gm25043-201ENSMUST00000158604 212 ntBASIC12.14□□□□□ -0.47
Usp4P35123 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC12.14□□□□□ -0.47
Usp4P35123 Mir6979-201ENSMUST00000183927 56 ntBASIC12.14□□□□□ -0.47
Usp4P35123 Mir6927-201ENSMUST00000184494 71 ntBASIC12.14□□□□□ -0.47
Usp4P35123 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC12.14□□□□□ -0.47
Usp4P35123 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC12.14□□□□□ -0.47
Usp4P35123 Gm37986-201ENSMUST00000193285 383 ntBASIC12.14□□□□□ -0.47
Usp4P35123 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC12.14□□□□□ -0.47
Usp4P35123 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC12.14□□□□□ -0.47
Usp4P35123 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC12.14□□□□□ -0.47
Usp4P35123 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Usp4P35123 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Usp4P35123 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC12.14□□□□□ -0.47
Usp4P35123 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC12.14□□□□□ -0.47
Usp4P35123 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
Usp4P35123 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Usp4P35123 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Usp4P35123 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC12.13□□□□□ -0.47
Usp4P35123 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC12.13□□□□□ -0.47
Usp4P35123 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC12.13□□□□□ -0.47
Usp4P35123 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.13□□□□□ -0.47
Usp4P35123 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC12.13□□□□□ -0.47
Usp4P35123 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Usp4P35123 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC12.13□□□□□ -0.47
Usp4P35123 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Gm7857-201ENSMUST00000117957 358 ntBASIC12.13□□□□□ -0.47
Usp4P35123 Gm7722-201ENSMUST00000120646 741 ntBASIC12.13□□□□□ -0.47
Usp4P35123 Gm14832-201ENSMUST00000121289 322 ntBASIC12.13□□□□□ -0.47
Usp4P35123 Gm24845-201ENSMUST00000158034 109 ntBASIC12.13□□□□□ -0.47
Usp4P35123 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC12.13□□□□□ -0.47
Usp4P35123 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC12.13□□□□□ -0.47
Usp4P35123 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Usp4P35123 Gm8385-201ENSMUST00000058999 643 ntBASIC12.13□□□□□ -0.47
Usp4P35123 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Usp4P35123 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Usp4P35123 Gm37954-201ENSMUST00000195400 2071 ntBASIC12.13□□□□□ -0.47
Usp4P35123 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Usp4P35123 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Usp4P35123 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usp4P35123 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC12.13□□□□□ -0.47
Usp4P35123 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC12.13□□□□□ -0.47
Usp4P35123 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Usp4P35123 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Usp4P35123 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usp4P35123 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Usp4P35123 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usp4P35123 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC12.12□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 64.6 ms