Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Chmp6P0C0A3 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chmp6P0C0A3 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chmp6P0C0A3 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC12.61□□□□□ -0.39
Chmp6P0C0A3 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gatsl2-201ENSMUST00000016088 7367 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm24891-201ENSMUST00000104391 136 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm13035-201ENSMUST00000117496 342 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm15207-201ENSMUST00000119259 442 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 H2-Q3-201ENSMUST00000172583 608 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Rn7s1-201ENSMUST00000174924 300 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Rn7s2-201ENSMUST00000175032 300 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm26461-201ENSMUST00000175064 290 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm18827-201ENSMUST00000188341 790 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm45575-201ENSMUST00000210283 548 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm7848-201ENSMUST00000210739 718 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 AC113082.1-201ENSMUST00000217324 327 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm5369-201ENSMUST00000217499 588 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Gm5537-201ENSMUST00000091117 1252 ntBASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Rps6ka6-204ENSMUST00000113428 4135 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Chmp6P0C0A3 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Gm8566-201ENSMUST00000120174 465 ntBASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Gm12566-201ENSMUST00000121479 359 ntBASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Gm4310-201ENSMUST00000177847 889 ntBASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Gm2965-201ENSMUST00000198365 343 ntBASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Armc9-201ENSMUST00000027434 5127 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Chmp6P0C0A3 Pde5a-201ENSMUST00000066728 6939 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 69.9 ms