Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Oprm1-208ENSMUST00000092734 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Gm6268-201ENSMUST00000115253 1453 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Col3a1P08121 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Col3a1P08121 Ap5s1-201ENSMUST00000089506 1432 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Col3a1P08121 Gm14274-201ENSMUST00000117182 615 ntBASIC13.65□□□□□ -0.22
Col3a1P08121 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Zfp637-210ENSMUST00000164472 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Gm9639-201ENSMUST00000172205 678 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Col3a1P08121 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Gm44814-201ENSMUST00000207018 434 ntBASIC13.65□□□□□ -0.22
Col3a1P08121 Gm18204-201ENSMUST00000209835 793 ntBASIC13.65□□□□□ -0.22
Col3a1P08121 Gm3433-201ENSMUST00000210149 1058 ntBASIC13.65□□□□□ -0.22
Col3a1P08121 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Gm9102-201ENSMUST00000219250 465 ntBASIC13.65□□□□□ -0.22
Col3a1P08121 Hddc2-201ENSMUST00000000304 858 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Gm8420-201ENSMUST00000097103 598 ntBASIC13.65□□□□□ -0.22
Col3a1P08121 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col3a1P08121 Spata7-201ENSMUST00000048402 2052 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
Col3a1P08121 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.23
Col3a1P08121 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Pde4b-206ENSMUST00000106907 1374 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Mir671-201ENSMUST00000102432 98 ntBASIC13.64□□□□□ -0.23
Col3a1P08121 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC13.64□□□□□ -0.23
Col3a1P08121 Mir453-201ENSMUST00000104732 82 ntBASIC13.64□□□□□ -0.23
Col3a1P08121 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC13.64□□□□□ -0.23
Col3a1P08121 Gm12663-201ENSMUST00000118481 958 ntBASIC13.64□□□□□ -0.23
Col3a1P08121 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC13.64□□□□□ -0.23
Col3a1P08121 Gm16165-201ENSMUST00000160140 795 ntBASIC13.64□□□□□ -0.23
Col3a1P08121 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Col3a1P08121 Gm26989-201ENSMUST00000182608 749 ntBASIC13.64□□□□□ -0.23
Col3a1P08121 1700017I07Rik-201ENSMUST00000184823 462 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC13.64□□□□□ -0.23
Col3a1P08121 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Gm45500-201ENSMUST00000211676 803 ntBASIC13.64□□□□□ -0.23
Col3a1P08121 Gm18035-201ENSMUST00000211962 589 ntBASIC13.64□□□□□ -0.23
Col3a1P08121 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Gm31513-201ENSMUST00000223261 684 ntTSL 2 BASIC13.64□□□□□ -0.23
Col3a1P08121 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Olfr889-201ENSMUST00000072290 945 ntTSL 5 BASIC13.64□□□□□ -0.23
Col3a1P08121 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Gm9544-201ENSMUST00000223349 2482 ntBASIC13.64□□□□□ -0.23
Col3a1P08121 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Col3a1P08121 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Ptprm-203ENSMUST00000224091 3773 ntBASIC13.64□□□□□ -0.23
Col3a1P08121 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC13.64□□□□□ -0.23
Col3a1P08121 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Gm18806-201ENSMUST00000207607 1775 ntBASIC13.64□□□□□ -0.23
Col3a1P08121 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col3a1P08121 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col3a1P08121 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col3a1P08121 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col3a1P08121 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Col3a1P08121 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col3a1P08121 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col3a1P08121 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
Col3a1P08121 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col3a1P08121 Ighv8-11-201ENSMUST00000103536 358 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Col3a1P08121 Gm12948-201ENSMUST00000119406 682 ntBASIC13.63□□□□□ -0.23
Col3a1P08121 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col3a1P08121 Txnrd2-205ENSMUST00000126778 491 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col3a1P08121 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC13.63□□□□□ -0.23
Col3a1P08121 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col3a1P08121 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col3a1P08121 Gm17115-201ENSMUST00000164075 885 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col3a1P08121 Gm26918-201ENSMUST00000182496 728 ntTSL 2 BASIC13.63□□□□□ -0.23
Col3a1P08121 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col3a1P08121 AC153962.2-201ENSMUST00000219417 550 ntBASIC13.63□□□□□ -0.23
Col3a1P08121 Prss51-204ENSMUST00000224112 1042 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms