Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Chd3B1AR17 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Chd3B1AR17 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Chd3B1AR17 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Chd3B1AR17 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Chd3B1AR17 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Chd3B1AR17 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Chd3B1AR17 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Chd3B1AR17 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Chd3B1AR17 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Chd3B1AR17 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Chd3B1AR17 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Chd3B1AR17 Gm9544-201ENSMUST00000223349 2482 ntBASIC11.33□□□□□ -0.6
Chd3B1AR17 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC11.32□□□□□ -0.6
Chd3B1AR17 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC11.32□□□□□ -0.6
Chd3B1AR17 CT573047.1-201ENSMUST00000223652 851 ntBASIC11.32□□□□□ -0.6
Chd3B1AR17 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Chd3B1AR17 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Chd3B1AR17 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Chd3B1AR17 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC11.32□□□□□ -0.6
Chd3B1AR17 Gm45743-201ENSMUST00000212701 2795 ntBASIC11.32□□□□□ -0.6
Chd3B1AR17 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Chd3B1AR17 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC11.32□□□□□ -0.6
Chd3B1AR17 Gm45716-203ENSMUST00000153734 644 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Chd3B1AR17 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Gm5100-201ENSMUST00000195631 589 ntBASIC11.32□□□□□ -0.6
Chd3B1AR17 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
Chd3B1AR17 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 4930555K19Rik-201ENSMUST00000060066 171 ntBASIC11.32□□□□□ -0.6
Chd3B1AR17 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 AC130823.1-201ENSMUST00000228929 1549 ntBASIC11.32□□□□□ -0.6
Chd3B1AR17 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Chd3B1AR17 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Chd3B1AR17 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC11.31□□□□□ -0.6
Chd3B1AR17 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm17889-201ENSMUST00000198410 598 ntBASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm45592-201ENSMUST00000209605 1043 ntBASIC11.31□□□□□ -0.6
Chd3B1AR17 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC11.31□□□□□ -0.6
Chd3B1AR17 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 AC154639.1-201ENSMUST00000224393 2849 ntBASIC11.31□□□□□ -0.6
Chd3B1AR17 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 AC124397.2-201ENSMUST00000225575 2215 ntBASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm12816-201ENSMUST00000118069 1212 ntBASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm11700-201ENSMUST00000119409 403 ntBASIC11.31□□□□□ -0.6
Chd3B1AR17 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm16397-201ENSMUST00000122201 494 ntBASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm25554-201ENSMUST00000158075 113 ntBASIC11.31□□□□□ -0.6
Chd3B1AR17 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm7741-201ENSMUST00000181445 989 ntBASIC11.31□□□□□ -0.6
Chd3B1AR17 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm37028-201ENSMUST00000194276 107 ntBASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Chd3B1AR17 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Chd3B1AR17 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Chd3B1AR17 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Chd3B1AR17 Gm13722-201ENSMUST00000117964 3066 ntBASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms