Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Msh4Q99MT2 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.83■□□□□ 0.77
Msh4Q99MT2 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Msh4Q99MT2 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Msh4Q99MT2 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Msh4Q99MT2 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Msh4Q99MT2 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
Msh4Q99MT2 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Msh4Q99MT2 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Msh4Q99MT2 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.83■□□□□ 0.76
Msh4Q99MT2 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Msh4Q99MT2 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Msh4Q99MT2 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Msh4Q99MT2 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Msh4Q99MT2 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
Msh4Q99MT2 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Msh4Q99MT2 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Msh4Q99MT2 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Msh4Q99MT2 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19.81■□□□□ 0.76
Msh4Q99MT2 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Msh4Q99MT2 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Msh4Q99MT2 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Msh4Q99MT2 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Msh4Q99MT2 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Msh4Q99MT2 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC19.8■□□□□ 0.76
Msh4Q99MT2 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC19.8■□□□□ 0.76
Msh4Q99MT2 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC19.8■□□□□ 0.76
Msh4Q99MT2 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Msh4Q99MT2 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC19.8■□□□□ 0.76
Msh4Q99MT2 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Msh4Q99MT2 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Msh4Q99MT2 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Msh4Q99MT2 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Msh4Q99MT2 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Msh4Q99MT2 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Msh4Q99MT2 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Msh4Q99MT2 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msh4Q99MT2 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.79■□□□□ 0.76
Msh4Q99MT2 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msh4Q99MT2 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msh4Q99MT2 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msh4Q99MT2 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msh4Q99MT2 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.79■□□□□ 0.76
Msh4Q99MT2 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msh4Q99MT2 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Msh4Q99MT2 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Msh4Q99MT2 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Msh4Q99MT2 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Msh4Q99MT2 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC19.78■□□□□ 0.76
Msh4Q99MT2 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC19.78■□□□□ 0.76
Msh4Q99MT2 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.78■□□□□ 0.76
Msh4Q99MT2 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.78■□□□□ 0.76
Msh4Q99MT2 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Msh4Q99MT2 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Msh4Q99MT2 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Msh4Q99MT2 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msh4Q99MT2 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Msh4Q99MT2 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msh4Q99MT2 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msh4Q99MT2 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msh4Q99MT2 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Msh4Q99MT2 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
Msh4Q99MT2 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msh4Q99MT2 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msh4Q99MT2 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msh4Q99MT2 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msh4Q99MT2 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msh4Q99MT2 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Msh4Q99MT2 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msh4Q99MT2 Gm22238-201ENSMUST00000175222 88 ntBASIC19.76■□□□□ 0.75
Msh4Q99MT2 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msh4Q99MT2 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC19.76■□□□□ 0.75
Msh4Q99MT2 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Msh4Q99MT2 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msh4Q99MT2 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msh4Q99MT2 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
Msh4Q99MT2 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Msh4Q99MT2 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Msh4Q99MT2 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Msh4Q99MT2 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Msh4Q99MT2 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.75■□□□□ 0.75
Msh4Q99MT2 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Msh4Q99MT2 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Msh4Q99MT2 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC19.74■□□□□ 0.75
Msh4Q99MT2 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Msh4Q99MT2 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Msh4Q99MT2 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Msh4Q99MT2 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msh4Q99MT2 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Msh4Q99MT2 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msh4Q99MT2 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msh4Q99MT2 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msh4Q99MT2 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msh4Q99MT2 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Msh4Q99MT2 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msh4Q99MT2 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.73■□□□□ 0.75
Msh4Q99MT2 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Msh4Q99MT2 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Msh4Q99MT2 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Msh4Q99MT2 Notumos-201ENSMUST00000151998 2659 ntBASIC19.72■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms