Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Usp40Q8BWR4 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
Usp40Q8BWR4 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC28.36■■■□□ 2.13
Usp40Q8BWR4 Gm18284-201ENSMUST00000172604 624 ntBASIC28.36■■■□□ 2.13
Usp40Q8BWR4 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
Usp40Q8BWR4 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC28.36■■■□□ 2.13
Usp40Q8BWR4 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
Usp40Q8BWR4 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Usp40Q8BWR4 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC28.36■■■□□ 2.13
Usp40Q8BWR4 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Usp40Q8BWR4 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Usp40Q8BWR4 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
Usp40Q8BWR4 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Usp40Q8BWR4 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
Usp40Q8BWR4 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
Usp40Q8BWR4 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Usp40Q8BWR4 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Usp40Q8BWR4 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Usp40Q8BWR4 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Usp40Q8BWR4 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Usp40Q8BWR4 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Usp40Q8BWR4 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Usp40Q8BWR4 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
Usp40Q8BWR4 Gm8495-201ENSMUST00000188740 694 ntBASIC28.33■■■□□ 2.13
Usp40Q8BWR4 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC28.33■■■□□ 2.13
Usp40Q8BWR4 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Usp40Q8BWR4 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Usp40Q8BWR4 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
Usp40Q8BWR4 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC28.33■■■□□ 2.13
Usp40Q8BWR4 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Usp40Q8BWR4 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Usp40Q8BWR4 Flvcr1-202ENSMUST00000191946 1216 ntBASIC28.32■■■□□ 2.12
Usp40Q8BWR4 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Usp40Q8BWR4 Spcs1-204ENSMUST00000226782 949 ntBASIC28.32■■■□□ 2.12
Usp40Q8BWR4 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Usp40Q8BWR4 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Usp40Q8BWR4 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Usp40Q8BWR4 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC28.32■■■□□ 2.12
Usp40Q8BWR4 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
Usp40Q8BWR4 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Usp40Q8BWR4 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Usp40Q8BWR4 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
Usp40Q8BWR4 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Usp40Q8BWR4 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Usp40Q8BWR4 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC28.31■■■□□ 2.12
Usp40Q8BWR4 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
Usp40Q8BWR4 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Usp40Q8BWR4 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC28.3■■■□□ 2.12
Usp40Q8BWR4 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC28.3■■■□□ 2.12
Usp40Q8BWR4 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC28.3■■■□□ 2.12
Usp40Q8BWR4 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Usp40Q8BWR4 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Usp40Q8BWR4 Gm44949-201ENSMUST00000206423 1450 ntBASIC28.29■■■□□ 2.12
Usp40Q8BWR4 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Usp40Q8BWR4 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC28.29■■■□□ 2.12
Usp40Q8BWR4 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Usp40Q8BWR4 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Usp40Q8BWR4 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Usp40Q8BWR4 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Usp40Q8BWR4 Gm5913-201ENSMUST00000119397 1399 ntBASIC28.28■■■□□ 2.12
Usp40Q8BWR4 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC28.28■■■□□ 2.12
Usp40Q8BWR4 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
Usp40Q8BWR4 Gm7160-202ENSMUST00000188519 1027 ntBASIC28.28■■■□□ 2.12
Usp40Q8BWR4 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC28.28■■■□□ 2.12
Usp40Q8BWR4 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Usp40Q8BWR4 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Usp40Q8BWR4 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Usp40Q8BWR4 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Usp40Q8BWR4 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
Usp40Q8BWR4 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC28.26■■■□□ 2.11
Usp40Q8BWR4 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
Usp40Q8BWR4 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Usp40Q8BWR4 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
Usp40Q8BWR4 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
Usp40Q8BWR4 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Usp40Q8BWR4 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Usp40Q8BWR4 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Usp40Q8BWR4 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC28.25■■■□□ 2.11
Usp40Q8BWR4 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
Usp40Q8BWR4 Gm26766-202ENSMUST00000227544 2347 ntBASIC28.25■■■□□ 2.11
Usp40Q8BWR4 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
Usp40Q8BWR4 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
Usp40Q8BWR4 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC28.24■■■□□ 2.11
Usp40Q8BWR4 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC28.24■■■□□ 2.11
Usp40Q8BWR4 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC28.24■■■□□ 2.11
Usp40Q8BWR4 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Usp40Q8BWR4 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Usp40Q8BWR4 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Usp40Q8BWR4 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC28.23■■■□□ 2.11
Usp40Q8BWR4 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Usp40Q8BWR4 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Usp40Q8BWR4 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Usp40Q8BWR4 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Usp40Q8BWR4 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Usp40Q8BWR4 Slc35b2-207ENSMUST00000226086 850 ntBASIC28.21■■■□□ 2.11
Usp40Q8BWR4 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms