Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf220Q6PDX6 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf220Q6PDX6 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf220Q6PDX6 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf220Q6PDX6 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf220Q6PDX6 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.2■□□□□ 0.66
Rnf220Q6PDX6 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf220Q6PDX6 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Rnf220Q6PDX6 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Rnf220Q6PDX6 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf220Q6PDX6 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf220Q6PDX6 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf220Q6PDX6 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf220Q6PDX6 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 AC117245.4-201ENSMUST00000217388 1646 ntBASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC19.19■□□□□ 0.66
Rnf220Q6PDX6 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Rarb-207ENSMUST00000225921 2756 ntBASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf220Q6PDX6 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf220Q6PDX6 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf220Q6PDX6 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf220Q6PDX6 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Rnf220Q6PDX6 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC19.17■□□□□ 0.66
Rnf220Q6PDX6 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf220Q6PDX6 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf220Q6PDX6 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf220Q6PDX6 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf220Q6PDX6 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf220Q6PDX6 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf220Q6PDX6 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf220Q6PDX6 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf220Q6PDX6 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf220Q6PDX6 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf220Q6PDX6 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Rnf220Q6PDX6 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf220Q6PDX6 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf220Q6PDX6 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf220Q6PDX6 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf220Q6PDX6 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf220Q6PDX6 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf220Q6PDX6 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Rnf220Q6PDX6 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Rnf220Q6PDX6 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC19.15■□□□□ 0.66
Rnf220Q6PDX6 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Rnf220Q6PDX6 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rnf220Q6PDX6 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rnf220Q6PDX6 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rnf220Q6PDX6 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rnf220Q6PDX6 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rnf220Q6PDX6 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rnf220Q6PDX6 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Rnf220Q6PDX6 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Rnf220Q6PDX6 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19.14■□□□□ 0.66
Rnf220Q6PDX6 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Rnf220Q6PDX6 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rnf220Q6PDX6 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Rnf220Q6PDX6 Golph3-205ENSMUST00000228671 2842 ntBASIC19.14■□□□□ 0.65
Rnf220Q6PDX6 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rnf220Q6PDX6 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Rnf220Q6PDX6 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rnf220Q6PDX6 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Rnf220Q6PDX6 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC19.13■□□□□ 0.65
Rnf220Q6PDX6 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Rnf220Q6PDX6 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rnf220Q6PDX6 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rnf220Q6PDX6 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Rnf220Q6PDX6 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Rnf220Q6PDX6 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.13■□□□□ 0.65
Rnf220Q6PDX6 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rnf220Q6PDX6 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rnf220Q6PDX6 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms