Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
Ddb1Q3U1J4 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
Ddb1Q3U1J4 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
Ddb1Q3U1J4 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
Ddb1Q3U1J4 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC26.41■■□□□ 1.82
Ddb1Q3U1J4 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
Ddb1Q3U1J4 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC26.41■■□□□ 1.82
Ddb1Q3U1J4 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Ddb1Q3U1J4 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Ddb1Q3U1J4 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Ddb1Q3U1J4 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC26.4■■□□□ 1.82
Ddb1Q3U1J4 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC26.4■■□□□ 1.82
Ddb1Q3U1J4 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
Ddb1Q3U1J4 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Ddb1Q3U1J4 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Ddb1Q3U1J4 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
Ddb1Q3U1J4 AC115037.1-201ENSMUST00000223391 2173 ntBASIC26.39■■□□□ 1.82
Ddb1Q3U1J4 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ddb1Q3U1J4 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ddb1Q3U1J4 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC26.39■■□□□ 1.82
Ddb1Q3U1J4 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ddb1Q3U1J4 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC26.39■■□□□ 1.82
Ddb1Q3U1J4 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
Ddb1Q3U1J4 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC26.39■■□□□ 1.81
Ddb1Q3U1J4 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Ddb1Q3U1J4 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ddb1Q3U1J4 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Ddb1Q3U1J4 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Ddb1Q3U1J4 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC26.38■■□□□ 1.81
Ddb1Q3U1J4 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC26.38■■□□□ 1.81
Ddb1Q3U1J4 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ddb1Q3U1J4 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Ddb1Q3U1J4 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
Ddb1Q3U1J4 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ddb1Q3U1J4 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
Ddb1Q3U1J4 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC26.37■■□□□ 1.81
Ddb1Q3U1J4 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
Ddb1Q3U1J4 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ddb1Q3U1J4 Gm12933-201ENSMUST00000120203 872 ntBASIC26.37■■□□□ 1.81
Ddb1Q3U1J4 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC26.37■■□□□ 1.81
Ddb1Q3U1J4 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Ddb1Q3U1J4 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Ddb1Q3U1J4 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
Ddb1Q3U1J4 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
Ddb1Q3U1J4 Gm11421-201ENSMUST00000122124 294 ntBASIC26.36■■□□□ 1.81
Ddb1Q3U1J4 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Ddb1Q3U1J4 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
Ddb1Q3U1J4 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Ddb1Q3U1J4 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ddb1Q3U1J4 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Ddb1Q3U1J4 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ddb1Q3U1J4 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Ddb1Q3U1J4 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC26.34■■□□□ 1.81
Ddb1Q3U1J4 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddb1Q3U1J4 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Ddb1Q3U1J4 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddb1Q3U1J4 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddb1Q3U1J4 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddb1Q3U1J4 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Ddb1Q3U1J4 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddb1Q3U1J4 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddb1Q3U1J4 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.8
Ddb1Q3U1J4 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 AC153890.1-201ENSMUST00000220021 2469 ntBASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ddb1Q3U1J4 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ddb1Q3U1J4 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ddb1Q3U1J4 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ddb1Q3U1J4 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ddb1Q3U1J4 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ddb1Q3U1J4 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ddb1Q3U1J4 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC26.31■■□□□ 1.8
Ddb1Q3U1J4 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
Ddb1Q3U1J4 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Ddb1Q3U1J4 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC26.3■■□□□ 1.8
Ddb1Q3U1J4 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Ddb1Q3U1J4 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Ddb1Q3U1J4 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC26.29■■□□□ 1.8
Ddb1Q3U1J4 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC26.29■■□□□ 1.8
Ddb1Q3U1J4 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC26.29■■□□□ 1.8
Ddb1Q3U1J4 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ddb1Q3U1J4 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
Ddb1Q3U1J4 Gm27045-201ENSMUST00000182145 1402 ntBASIC26.28■■□□□ 1.8
Ddb1Q3U1J4 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ddb1Q3U1J4 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ddb1Q3U1J4 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ddb1Q3U1J4 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ddb1Q3U1J4 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddb1Q3U1J4 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddb1Q3U1J4 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC26.27■■□□□ 1.8
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms