Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Msx1P13297 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Msx1P13297 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Msx1P13297 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Msx1P13297 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Msx1P13297 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Msx1P13297 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.32■□□□□ 0.68
Msx1P13297 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Msx1P13297 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Msx1P13297 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Msx1P13297 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Msx1P13297 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Msx1P13297 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.32■□□□□ 0.68
Msx1P13297 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Msx1P13297 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Msx1P13297 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
Msx1P13297 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
Msx1P13297 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC19.31■□□□□ 0.68
Msx1P13297 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
Msx1P13297 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Msx1P13297 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Msx1P13297 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Msx1P13297 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Msx1P13297 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.3■□□□□ 0.68
Msx1P13297 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC19.3■□□□□ 0.68
Msx1P13297 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Msx1P13297 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Msx1P13297 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.3■□□□□ 0.68
Msx1P13297 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Msx1P13297 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Msx1P13297 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.3■□□□□ 0.68
Msx1P13297 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.3■□□□□ 0.68
Msx1P13297 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC19.3■□□□□ 0.68
Msx1P13297 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Msx1P13297 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Msx1P13297 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Msx1P13297 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Msx1P13297 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Msx1P13297 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Msx1P13297 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Msx1P13297 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Msx1P13297 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Msx1P13297 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Msx1P13297 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msx1P13297 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Msx1P13297 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Msx1P13297 Gm2011-201ENSMUST00000203124 1263 ntBASIC19.28■□□□□ 0.68
Msx1P13297 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC19.28■□□□□ 0.68
Msx1P13297 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msx1P13297 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Msx1P13297 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Msx1P13297 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
Msx1P13297 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Msx1P13297 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Msx1P13297 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Msx1P13297 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Msx1P13297 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Msx1P13297 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Msx1P13297 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Msx1P13297 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Msx1P13297 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Msx1P13297 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
Msx1P13297 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Msx1P13297 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Msx1P13297 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Msx1P13297 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.26■□□□□ 0.67
Msx1P13297 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Msx1P13297 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Msx1P13297 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msx1P13297 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msx1P13297 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Msx1P13297 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC19.25■□□□□ 0.67
Msx1P13297 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Msx1P13297 Gm29257-201ENSMUST00000186115 639 ntBASIC19.25■□□□□ 0.67
Msx1P13297 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.25■□□□□ 0.67
Msx1P13297 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.25■□□□□ 0.67
Msx1P13297 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Msx1P13297 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msx1P13297 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Msx1P13297 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msx1P13297 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msx1P13297 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msx1P13297 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.24■□□□□ 0.67
Msx1P13297 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
Msx1P13297 Gm6139-201ENSMUST00000079261 882 ntBASIC19.24■□□□□ 0.67
Msx1P13297 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msx1P13297 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Msx1P13297 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Msx1P13297 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msx1P13297 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Msx1P13297 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msx1P13297 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC19.23■□□□□ 0.67
Msx1P13297 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
Msx1P13297 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msx1P13297 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msx1P13297 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msx1P13297 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msx1P13297 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Msx1P13297 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Msx1P13297 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 1021.5 ms