Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ube3bQ9ES34 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Ube3bQ9ES34 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ube3bQ9ES34 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Ube3bQ9ES34 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ube3bQ9ES34 Gm8369-201ENSMUST00000079855 1374 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Ube3bQ9ES34 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ube3bQ9ES34 AC169511.2-201ENSMUST00000226674 2063 ntBASIC13.81□□□□□ -0.2
Ube3bQ9ES34 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
Ube3bQ9ES34 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC13.81□□□□□ -0.2
Ube3bQ9ES34 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Ube3bQ9ES34 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ube3bQ9ES34 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ube3bQ9ES34 AC124397.2-201ENSMUST00000225575 2215 ntBASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Gm25148-201ENSMUST00000104611 123 ntBASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Gm43966-201ENSMUST00000203301 612 ntBASIC13.8□□□□□ -0.2
Ube3bQ9ES34 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Olfr258-ps1-202ENSMUST00000218625 1085 ntTSL 5 BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 AC122891.1-201ENSMUST00000218671 268 ntBASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Gm6722-201ENSMUST00000221586 390 ntBASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 AC154639.1-201ENSMUST00000224393 2849 ntBASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ube3bQ9ES34 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Xlr-203ENSMUST00000114810 984 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm11892-201ENSMUST00000117711 1202 ntBASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm11451-201ENSMUST00000118946 630 ntBASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm16219-201ENSMUST00000120096 274 ntBASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm1848-201ENSMUST00000120711 789 ntBASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm12208-201ENSMUST00000122004 163 ntBASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm25492-201ENSMUST00000157383 129 ntBASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm37905-201ENSMUST00000195310 341 ntBASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm44329-201ENSMUST00000197469 112 ntBASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Gm43553-201ENSMUST00000200900 685 ntBASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 CT030170.2-201ENSMUST00000223267 126 ntBASIC13.79□□□□□ -0.2
Ube3bQ9ES34 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Xlr-201ENSMUST00000067763 1032 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ube3bQ9ES34 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 74 ms