Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Gm45011-201ENSMUST00000207620 2297 ntBASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Gm1840-201ENSMUST00000051687 1432 ntBASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Gm14263-201ENSMUST00000117955 746 ntBASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 AC154290.1-201ENSMUST00000223786 1240 ntBASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Vps28Q9D1C8 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Gm11700-201ENSMUST00000119409 403 ntBASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Gm15573-201ENSMUST00000119487 540 ntBASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Mup-ps26-201ENSMUST00000121751 202 ntBASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Gm22144-201ENSMUST00000157402 102 ntBASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Gm9540-201ENSMUST00000188230 478 ntBASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Gm6108-201ENSMUST00000208365 367 ntBASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Gm8146-201ENSMUST00000192106 1847 ntBASIC11.88□□□□□ -0.51
Vps28Q9D1C8 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
Vps28Q9D1C8 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Vps28Q9D1C8 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Vps28Q9D1C8 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Vps28Q9D1C8 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Vps28Q9D1C8 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Vps28Q9D1C8 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Vps28Q9D1C8 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC11.87□□□□□ -0.51
Vps28Q9D1C8 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Vps28Q9D1C8 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Vps28Q9D1C8 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Vps28Q9D1C8 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Vps28Q9D1C8 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Vps28Q9D1C8 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 56.1 ms