Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Gm15595-201ENSMUST00000120840 961 ntBASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Gm10807-201ENSMUST00000177134 795 ntBASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 AC112945.1-201ENSMUST00000226413 514 ntBASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Gm44086-201ENSMUST00000203251 2349 ntBASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
Upf3bQ3ULL6 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC12.4□□□□□ -0.43
Upf3bQ3ULL6 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Upf3bQ3ULL6 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.43
Upf3bQ3ULL6 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm12165-201ENSMUST00000117047 342 ntBASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm9062-201ENSMUST00000117712 727 ntBASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm8731-201ENSMUST00000118088 412 ntBASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm12566-201ENSMUST00000121479 359 ntBASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm43002-201ENSMUST00000200310 155 ntBASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm7207-201ENSMUST00000211575 1067 ntBASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Spcs1-203ENSMUST00000226374 592 ntBASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm37849-201ENSMUST00000194722 1881 ntBASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3bQ3ULL6 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 68.1 ms