Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
Hoxd3P09027 Gm19210-201ENSMUST00000199562 1350 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 Arl14ep-202ENSMUST00000093883 1363 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Gm26286-201ENSMUST00000104166 134 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 Casp8ap2-202ENSMUST00000108178 1189 ntAPPRIS ALT2 TSL 5 BASIC9.29□□□□□ -0.92
Hoxd3P09027 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 Gm14058-201ENSMUST00000116082 735 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 Gm15403-201ENSMUST00000119343 1227 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 Gm12196-201ENSMUST00000120954 262 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC9.29□□□□□ -0.92
Hoxd3P09027 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC9.29□□□□□ -0.92
Hoxd3P09027 Gm10376-202ENSMUST00000169756 900 ntAPPRIS P5 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Gm8343-201ENSMUST00000182705 994 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 Gm2087-201ENSMUST00000188217 366 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Gm3489-201ENSMUST00000190083 528 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 Gm37986-201ENSMUST00000193285 383 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC9.29□□□□□ -0.92
Hoxd3P09027 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC9.29□□□□□ -0.92
Hoxd3P09027 AL589696.1-201ENSMUST00000225711 330 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 Klrk1-201ENSMUST00000032252 1270 ntAPPRIS P4 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Olfr1537-201ENSMUST00000073248 945 ntAPPRIS P2 BASIC9.29□□□□□ -0.92
Hoxd3P09027 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Gm37269-201ENSMUST00000193906 1891 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 AC126257.1-201ENSMUST00000213195 1536 ntBASIC9.29□□□□□ -0.92
Hoxd3P09027 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC9.29□□□□□ -0.92
Hoxd3P09027 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC9.29□□□□□ -0.92
Hoxd3P09027 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
Hoxd3P09027 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Fbxo40-202ENSMUST00000114806 2518 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Hoxd3P09027 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC9.28□□□□□ -0.92
Hoxd3P09027 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC9.28□□□□□ -0.92
Hoxd3P09027 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC9.28□□□□□ -0.92
Hoxd3P09027 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC9.28□□□□□ -0.92
Hoxd3P09027 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 Cep350-204ENSMUST00000138762 13307 ntAPPRIS P1 TSL 5 BASIC9.28□□□□□ -0.92
Hoxd3P09027 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC9.28□□□□□ -0.92
Hoxd3P09027 Serpina3a-202ENSMUST00000109965 1204 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 Gm13035-201ENSMUST00000117496 342 ntBASIC9.28□□□□□ -0.92
Hoxd3P09027 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC9.28□□□□□ -0.92
Hoxd3P09027 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 Gm35202-201ENSMUST00000130083 712 ntTSL 2 BASIC9.28□□□□□ -0.92
Hoxd3P09027 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC9.28□□□□□ -0.92
Hoxd3P09027 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC9.28□□□□□ -0.92
Hoxd3P09027 Gm28011-201ENSMUST00000184097 175 ntBASIC9.28□□□□□ -0.92
Hoxd3P09027 Gm3332-201ENSMUST00000189337 928 ntBASIC9.28□□□□□ -0.92
Hoxd3P09027 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 Gm38133-201ENSMUST00000195109 815 ntTSL 5 BASIC9.28□□□□□ -0.92
Hoxd3P09027 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC9.28□□□□□ -0.92
Hoxd3P09027 Gm3786-201ENSMUST00000202659 378 ntBASIC9.28□□□□□ -0.92
Hoxd3P09027 Gm18539-201ENSMUST00000204745 1090 ntBASIC9.28□□□□□ -0.92
Hoxd3P09027 Gm18329-201ENSMUST00000215832 589 ntBASIC9.28□□□□□ -0.92
Hoxd3P09027 Gm6653-201ENSMUST00000218063 1288 ntBASIC9.28□□□□□ -0.92
Hoxd3P09027 AC160105.1-201ENSMUST00000221931 682 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Hoxd3P09027 Spcs1-203ENSMUST00000226374 592 ntBASIC9.28□□□□□ -0.92
Hoxd3P09027 AC164597.2-201ENSMUST00000226738 603 ntBASIC9.28□□□□□ -0.92
Hoxd3P09027 AC131330.1-201ENSMUST00000227814 1015 ntBASIC9.28□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms