Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Gm10012-201ENSMUST00000078252 192 ntBASIC9.55□□□□□ -0.88
Hmgb3O54879 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Ncor1-201ENSMUST00000018645 9037 ntAPPRIS P2 TSL 5 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Kat6b-209ENSMUST00000182964 7699 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC9.55□□□□□ -0.88
Hmgb3O54879 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Ppat-202ENSMUST00000140076 3981 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Plekhn1-204ENSMUST00000218699 3196 ntTSL 2 BASIC9.55□□□□□ -0.88
Hmgb3O54879 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Hmgb3O54879 Gm18262-201ENSMUST00000222560 1946 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm10686-201ENSMUST00000215389 3247 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm7642-201ENSMUST00000216345 1809 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Asap1-202ENSMUST00000110114 4409 ntAPPRIS ALT2 TSL 5 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 AC154404.1-201ENSMUST00000223601 2077 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC9.54□□□□□ -0.88
Hmgb3O54879 AC159195.3-201ENSMUST00000225162 2211 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm24934-201ENSMUST00000103764 111 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm13736-201ENSMUST00000119272 253 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC9.54□□□□□ -0.88
Hmgb3O54879 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm23984-201ENSMUST00000157139 203 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm8738-201ENSMUST00000172606 329 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm8494-201ENSMUST00000178171 1233 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm43002-201ENSMUST00000200310 155 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm44755-201ENSMUST00000207830 2102 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm17931-201ENSMUST00000208132 634 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm45930-201ENSMUST00000221330 292 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm5356-201ENSMUST00000093326 615 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Zfp964-203ENSMUST00000204285 4333 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Med17-201ENSMUST00000034411 3964 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm45206-201ENSMUST00000206885 2285 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Ppip5k1-204ENSMUST00000110627 5494 ntAPPRIS ALT2 TSL 5 BASIC9.54□□□□□ -0.88
Hmgb3O54879 AC174678.2-201ENSMUST00000156420 3275 ntAPPRIS P1 TSL 5 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Csgalnact1-201ENSMUST00000078350 3943 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Zfp280b-201ENSMUST00000061617 5097 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Asph-211ENSMUST00000108339 6453 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Gm5703-201ENSMUST00000186658 3973 ntBASIC9.54□□□□□ -0.88
Hmgb3O54879 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hmgb3O54879 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Cdh23-202ENSMUST00000105461 11096 ntAPPRIS ALT2 TSL 5 BASIC9.53□□□□□ -0.88
Hmgb3O54879 AC167022.1-201ENSMUST00000218647 1458 ntBASIC9.53□□□□□ -0.88
Hmgb3O54879 Tnc-204ENSMUST00000107377 7100 ntAPPRIS P2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Il27ra-201ENSMUST00000005601 2664 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Arid1a-201ENSMUST00000008024 6486 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Kcnh7-203ENSMUST00000112454 3073 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hmgb3O54879 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
Retrieved 100 of 76,532 protein–RNA pairs in 100.8 ms