Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Pet100-201ENSMUST00000156380 1193 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm25343-201ENSMUST00000157460 107 ntBASIC13.55□□□□□ -0.24
Scn11aQ9R053 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Dusp3-207ENSMUST00000176261 496 ntTSL 3 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm29135-201ENSMUST00000188411 612 ntTSL 5 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Nmbr-207ENSMUST00000190751 921 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm2345-201ENSMUST00000193451 589 ntBASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm38344-201ENSMUST00000195306 1353 ntBASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm43127-201ENSMUST00000195890 2789 ntBASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm42829-201ENSMUST00000198417 2585 ntBASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm31520-203ENSMUST00000204874 647 ntTSL 3 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm9487-201ENSMUST00000216600 472 ntBASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm14005-209ENSMUST00000224993 1832 ntBASIC13.55□□□□□ -0.24
Scn11aQ9R053 Ntrk2-208ENSMUST00000225583 2719 ntBASIC13.55□□□□□ -0.24
Scn11aQ9R053 Cdkn3-201ENSMUST00000067426 917 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Zfp872-201ENSMUST00000091508 1395 ntTSL 5 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm829-201ENSMUST00000123741 465 ntTSL 3 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm28096-201ENSMUST00000191391 824 ntTSL 5 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm6677-201ENSMUST00000195100 441 ntBASIC13.55□□□□□ -0.24
Scn11aQ9R053 Gm9102-201ENSMUST00000219250 465 ntBASIC13.55□□□□□ -0.24
Scn11aQ9R053 Psca-201ENSMUST00000023265 860 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Mphosph10-201ENSMUST00000032735 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Arhgef3-204ENSMUST00000225949 3198 ntBASIC13.55□□□□□ -0.24
Scn11aQ9R053 Ksr1-207ENSMUST00000226282 5260 ntBASIC13.55□□□□□ -0.24
Scn11aQ9R053 Brcc3-203ENSMUST00000118428 2093 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scn11aQ9R053 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Pradc1-204ENSMUST00000126805 953 ntTSL 2 BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Gm15935-201ENSMUST00000141004 607 ntTSL 3 BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Gm16547-201ENSMUST00000159474 293 ntBASIC13.54□□□□□ -0.24
Scn11aQ9R053 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Gm45469-201ENSMUST00000210468 854 ntTSL 3 BASIC13.54□□□□□ -0.24
Scn11aQ9R053 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Gm2594-201ENSMUST00000214774 742 ntBASIC13.54□□□□□ -0.24
Scn11aQ9R053 Tbc1d21-201ENSMUST00000040217 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Tnfrsf18-201ENSMUST00000040274 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Gm25580-201ENSMUST00000083409 327 ntBASIC13.54□□□□□ -0.24
Scn11aQ9R053 Syk-202ENSMUST00000118756 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Gm13722-201ENSMUST00000117964 3066 ntBASIC13.54□□□□□ -0.24
Scn11aQ9R053 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC13.54□□□□□ -0.24
Scn11aQ9R053 AC117194.1-201ENSMUST00000224847 3002 ntBASIC13.54□□□□□ -0.24
Scn11aQ9R053 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Ppp2r2cos-201ENSMUST00000152862 1491 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scn11aQ9R053 Gm44806-201ENSMUST00000205574 2303 ntBASIC13.53□□□□□ -0.24
Scn11aQ9R053 Matr3-216ENSMUST00000190653 1846 ntTSL 5 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Eid3-201ENSMUST00000211623 1305 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 B2m-201ENSMUST00000102476 860 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Gm13802-201ENSMUST00000150159 663 ntTSL 3 BASIC13.53□□□□□ -0.24
Scn11aQ9R053 Mir432-201ENSMUST00000157230 75 ntBASIC13.53□□□□□ -0.24
Scn11aQ9R053 Gm19013-201ENSMUST00000183895 1222 ntBASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms