Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Cbfa2t3-203ENSMUST00000127984 7645 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Gm6506-201ENSMUST00000119775 1136 ntBASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Gm11941-201ENSMUST00000119904 610 ntBASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 H2-Q3-201ENSMUST00000172583 608 ntBASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Gm19287-201ENSMUST00000203190 358 ntBASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Olfr1347-205ENSMUST00000220413 964 ntBASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Tjp1-201ENSMUST00000032729 6102 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Madd-213ENSMUST00000111376 5927 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Prrx1-201ENSMUST00000027878 4952 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 AC173482.6-201ENSMUST00000225889 1741 ntBASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Slc7a1-201ENSMUST00000048116 7179 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Gm7851-201ENSMUST00000117574 323 ntBASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Gm13045-201ENSMUST00000119019 712 ntBASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Gm14441-201ENSMUST00000121960 540 ntBASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Gm7467-201ENSMUST00000185173 652 ntBASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Gm42629-201ENSMUST00000199063 1102 ntBASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Gm4482-201ENSMUST00000200876 742 ntBASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 AC121960.1-201ENSMUST00000227982 564 ntBASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdc40Q9DC48 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms