Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gm14247-201ENSMUST00000120950 237 ntBASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gm44711-201ENSMUST00000205414 1264 ntBASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gm21769-201ENSMUST00000211922 111 ntBASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Fn1-203ENSMUST00000186129 7797 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Krt7-201ENSMUST00000068904 4094 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Pomt1-201ENSMUST00000036473 2918 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Ezr-201ENSMUST00000064234 3164 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Ift88os-201ENSMUST00000149702 2016 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Man2b2-201ENSMUST00000031002 3330 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gm18626-201ENSMUST00000221512 1409 ntBASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gm12296-201ENSMUST00000144922 3220 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Gon4l-203ENSMUST00000107498 7537 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Ddx28Q9CWT6 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Slc6a9-202ENSMUST00000063857 3146 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Plekhg4-203ENSMUST00000160191 3339 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Myh1-202ENSMUST00000075734 6012 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Abl2-202ENSMUST00000166172 10151 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Gm12036-201ENSMUST00000120008 530 ntBASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Rprl1-201ENSMUST00000158050 327 ntBASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Gm6621-201ENSMUST00000193251 772 ntBASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Gm38341-201ENSMUST00000195357 515 ntBASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Gm45865-201ENSMUST00000211815 945 ntBASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Gm8712-201ENSMUST00000221090 701 ntBASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Cts7-204ENSMUST00000225321 1257 ntBASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 AC154222.2-201ENSMUST00000225848 607 ntBASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Abi2-207ENSMUST00000188618 4723 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Usp11-201ENSMUST00000033383 3467 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Kdm4a-204ENSMUST00000106406 4663 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Arhgef10-202ENSMUST00000110800 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Ciita-201ENSMUST00000023147 5254 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Ddx28Q9CWT6 Psd-201ENSMUST00000041391 3900 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Ddx28Q9CWT6 Psd-202ENSMUST00000096029 3903 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Ddx28Q9CWT6 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Ddx28Q9CWT6 Gm40617-201ENSMUST00000218840 2420 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Ddx28Q9CWT6 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Ddx28Q9CWT6 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Ddx28Q9CWT6 Tcp10a-202ENSMUST00000128533 2589 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Ddx28Q9CWT6 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Ddx28Q9CWT6 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Ddx28Q9CWT6 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Ddx28Q9CWT6 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms