Protein–RNA interactions for Protein: Q99J95

Cdk9, Cyclin-dependent kinase 9, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk9Q99J95 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Gm38241-201ENSMUST00000192641 898 ntBASIC11.69□□□□□ -0.54
Cdk9Q99J95 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Gm17931-201ENSMUST00000208132 634 ntBASIC11.69□□□□□ -0.54
Cdk9Q99J95 Gm45331-201ENSMUST00000209868 554 ntBASIC11.69□□□□□ -0.54
Cdk9Q99J95 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 AC133598.1-201ENSMUST00000224327 660 ntBASIC11.69□□□□□ -0.54
Cdk9Q99J95 CU024892.2-201ENSMUST00000224608 832 ntBASIC11.69□□□□□ -0.54
Cdk9Q99J95 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Sla2-202ENSMUST00000109561 2634 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Ndufs1-203ENSMUST00000168099 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Gm45161-201ENSMUST00000207316 2263 ntBASIC11.69□□□□□ -0.54
Cdk9Q99J95 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Cdk9Q99J95 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Mapre2-203ENSMUST00000118826 3052 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Asb8-204ENSMUST00000143400 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Ipo4-201ENSMUST00000047131 3846 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Gm12329-201ENSMUST00000120829 1007 ntBASIC11.68□□□□□ -0.54
Cdk9Q99J95 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Tctex1d1-205ENSMUST00000140654 891 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Gm7619-201ENSMUST00000210649 1282 ntBASIC11.68□□□□□ -0.54
Cdk9Q99J95 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 AC140406.1-201ENSMUST00000226481 465 ntBASIC11.68□□□□□ -0.54
Cdk9Q99J95 Gm10254-201ENSMUST00000052888 867 ntBASIC11.68□□□□□ -0.54
Cdk9Q99J95 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Gm43242-201ENSMUST00000199507 1776 ntBASIC11.68□□□□□ -0.54
Cdk9Q99J95 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Dyrk4-202ENSMUST00000078521 2252 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Zfp68-203ENSMUST00000110905 4749 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Rnf40-206ENSMUST00000206914 3735 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Hk3-201ENSMUST00000052949 3219 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 D930048N14Rik-202ENSMUST00000117859 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdk9Q99J95 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Slc45a1-202ENSMUST00000117997 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Exosc10-202ENSMUST00000076022 2682 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 C4a-207ENSMUST00000160679 5371 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Emc1-201ENSMUST00000042096 4706 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdk9Q99J95 Gm5940-201ENSMUST00000117582 1068 ntBASIC11.67□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms