Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm11996-201ENSMUST00000117538 915 ntBASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm11502-201ENSMUST00000120917 1211 ntBASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Prdx2-208ENSMUST00000164807 1175 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm20822-201ENSMUST00000165756 687 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm3238-201ENSMUST00000168298 693 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm20828-201ENSMUST00000170889 687 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm20414-201ENSMUST00000172918 646 ntBASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm23694-201ENSMUST00000179335 110 ntBASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Mir7051-201ENSMUST00000184167 73 ntBASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm43610-201ENSMUST00000199117 365 ntBASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm44216-201ENSMUST00000203942 157 ntBASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Fkbpl-201ENSMUST00000036720 1270 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Gm42748-201ENSMUST00000199354 2341 ntBASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC10.22□□□□□ -0.77
Snrnp40Q6PE01 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Gm37861-201ENSMUST00000193534 2869 ntBASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Gm15197-201ENSMUST00000120526 478 ntBASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Gm13008-201ENSMUST00000142289 507 ntTSL 5 BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Gm25604-201ENSMUST00000158359 133 ntBASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Gm37365-201ENSMUST00000193109 409 ntBASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Gm42433-201ENSMUST00000196806 940 ntBASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Gm26670-202ENSMUST00000226862 340 ntBASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Olfr538-201ENSMUST00000084457 933 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
Snrnp40Q6PE01 Gm42941-201ENSMUST00000200347 1321 ntBASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Gm45053-201ENSMUST00000206112 2499 ntBASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
Snrnp40Q6PE01 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Snrnp40Q6PE01 Ntrk2-204ENSMUST00000224259 3049 ntBASIC10.2□□□□□ -0.78
Snrnp40Q6PE01 AC117194.1-201ENSMUST00000224847 3002 ntBASIC10.2□□□□□ -0.78
Snrnp40Q6PE01 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC10.2□□□□□ -0.78
Snrnp40Q6PE01 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Snrnp40Q6PE01 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Snrnp40Q6PE01 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Snrnp40Q6PE01 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Snrnp40Q6PE01 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms