Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Ift88Q61371 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Ift88Q61371 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC12.8□□□□□ -0.36
Ift88Q61371 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Ift88Q61371 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Ift88Q61371 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Gm42629-201ENSMUST00000199063 1102 ntBASIC12.8□□□□□ -0.36
Ift88Q61371 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Ift88Q61371 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC12.8□□□□□ -0.36
Ift88Q61371 Gm44651-201ENSMUST00000207343 372 ntBASIC12.8□□□□□ -0.36
Ift88Q61371 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Gm25857-201ENSMUST00000082788 129 ntBASIC12.8□□□□□ -0.36
Ift88Q61371 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Ift88Q61371 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Ift88Q61371 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Ift88Q61371 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC12.8□□□□□ -0.36
Ift88Q61371 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ift88Q61371 AC125374.1-201ENSMUST00000213573 1400 ntBASIC12.79□□□□□ -0.36
Ift88Q61371 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Ift88Q61371 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Ift88Q61371 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Gm22133-201ENSMUST00000102082 109 ntBASIC12.79□□□□□ -0.36
Ift88Q61371 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Ift88Q61371 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Ift88Q61371 Gm13392-201ENSMUST00000117708 150 ntBASIC12.79□□□□□ -0.36
Ift88Q61371 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Ift88Q61371 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Gm38117-201ENSMUST00000194653 939 ntBASIC12.79□□□□□ -0.36
Ift88Q61371 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC12.79□□□□□ -0.36
Ift88Q61371 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Ift88Q61371 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Ift88Q61371 Gm10478-201ENSMUST00000084451 396 ntBASIC12.79□□□□□ -0.36
Ift88Q61371 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Ift88Q61371 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC12.79□□□□□ -0.36
Ift88Q61371 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ift88Q61371 AC167565.1-201ENSMUST00000226980 1833 ntBASIC12.78□□□□□ -0.36
Ift88Q61371 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Ift88Q61371 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC12.78□□□□□ -0.36
Ift88Q61371 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Ift88Q61371 Gm3329-201ENSMUST00000159873 556 ntBASIC12.78□□□□□ -0.36
Ift88Q61371 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Ift88Q61371 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC12.78□□□□□ -0.36
Ift88Q61371 Gm27516-201ENSMUST00000184237 98 ntBASIC12.78□□□□□ -0.36
Ift88Q61371 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Gm6439-201ENSMUST00000199849 862 ntBASIC12.78□□□□□ -0.36
Ift88Q61371 Aprt-ps-201ENSMUST00000212311 505 ntBASIC12.78□□□□□ -0.36
Ift88Q61371 AC122371.3-201ENSMUST00000223402 1061 ntBASIC12.78□□□□□ -0.36
Ift88Q61371 AC159205.5-202ENSMUST00000224849 386 ntBASIC12.78□□□□□ -0.36
Ift88Q61371 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC12.78□□□□□ -0.36
Ift88Q61371 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ift88Q61371 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 65.5 ms