Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Gm15566-201ENSMUST00000121130 590 ntBASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Gm29499-201ENSMUST00000189151 486 ntBASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Gm28329-201ENSMUST00000191208 689 ntBASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Gm29171-201ENSMUST00000191397 486 ntBASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Gm6108-201ENSMUST00000208365 367 ntBASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 AC131330.1-201ENSMUST00000227814 1015 ntBASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 AC124397.2-201ENSMUST00000225575 2215 ntBASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
Upf3bQ3ULL6 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gm11500-201ENSMUST00000118237 601 ntBASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gm6397-201ENSMUST00000161973 1069 ntBASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gm7551-201ENSMUST00000089593 1074 ntBASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gm5380-201ENSMUST00000119296 2136 ntBASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Gm45776-201ENSMUST00000212366 1522 ntBASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC12.41□□□□□ -0.42
Upf3bQ3ULL6 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3bQ3ULL6 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 77.3 ms