Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Gm17230-201ENSMUST00000171194 3942 ntBASIC13.67□□□□□ -0.22
Limch1Q3UH68 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
Limch1Q3UH68 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Limch1Q3UH68 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC13.66□□□□□ -0.22
Limch1Q3UH68 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Gm8343-201ENSMUST00000182705 994 ntBASIC13.66□□□□□ -0.22
Limch1Q3UH68 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Gm5733-201ENSMUST00000190232 939 ntBASIC13.66□□□□□ -0.22
Limch1Q3UH68 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC13.66□□□□□ -0.22
Limch1Q3UH68 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 AC153961.1-201ENSMUST00000217760 385 ntBASIC13.66□□□□□ -0.22
Limch1Q3UH68 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Gm26448-201ENSMUST00000082446 203 ntBASIC13.66□□□□□ -0.22
Limch1Q3UH68 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Gm2128-201ENSMUST00000108009 2560 ntBASIC13.66□□□□□ -0.22
Limch1Q3UH68 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Limch1Q3UH68 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Gm8566-201ENSMUST00000120174 465 ntBASIC13.65□□□□□ -0.22
Limch1Q3UH68 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC13.65□□□□□ -0.22
Limch1Q3UH68 Gm43184-201ENSMUST00000197247 542 ntBASIC13.65□□□□□ -0.22
Limch1Q3UH68 Gm6450-201ENSMUST00000200896 574 ntBASIC13.65□□□□□ -0.22
Limch1Q3UH68 Gm43916-201ENSMUST00000205062 967 ntBASIC13.65□□□□□ -0.22
Limch1Q3UH68 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Gm4157-201ENSMUST00000211647 679 ntBASIC13.65□□□□□ -0.22
Limch1Q3UH68 Lect2-202ENSMUST00000225183 823 ntBASIC13.65□□□□□ -0.22
Limch1Q3UH68 AC159103.1-201ENSMUST00000228325 429 ntBASIC13.65□□□□□ -0.22
Limch1Q3UH68 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Limch1Q3UH68 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm7841-201ENSMUST00000122108 1629 ntBASIC13.64□□□□□ -0.23
Limch1Q3UH68 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 66.9 ms