Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm43912-201ENSMUST00000204352 538 ntBASIC12.86□□□□□ -0.35
Col6a1Q04857 Gm6855-201ENSMUST00000206307 790 ntBASIC12.86□□□□□ -0.35
Col6a1Q04857 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Gm6390-201ENSMUST00000215034 589 ntBASIC12.86□□□□□ -0.35
Col6a1Q04857 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Col6a1Q04857 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col6a1Q04857 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Col6a1Q04857 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.86□□□□□ -0.35
Col6a1Q04857 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Col6a1Q04857 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC12.85□□□□□ -0.35
Col6a1Q04857 Map1b-203ENSMUST00000223725 2669 ntBASIC12.85□□□□□ -0.35
Col6a1Q04857 Gm43075-201ENSMUST00000198613 3905 ntBASIC12.85□□□□□ -0.35
Col6a1Q04857 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Col6a1Q04857 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Col6a1Q04857 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Col6a1Q04857 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Col6a1Q04857 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC12.85□□□□□ -0.35
Col6a1Q04857 Gm11560-201ENSMUST00000117567 948 ntBASIC12.85□□□□□ -0.35
Col6a1Q04857 Gm11578-201ENSMUST00000118530 459 ntBASIC12.85□□□□□ -0.35
Col6a1Q04857 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Col6a1Q04857 Snrnp25-202ENSMUST00000121182 659 ntAPPRIS ALT2 TSL 3 BASIC12.85□□□□□ -0.35
Col6a1Q04857 Gm12453-201ENSMUST00000121981 331 ntBASIC12.85□□□□□ -0.35
Col6a1Q04857 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Fcgr2b-203ENSMUST00000159688 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC12.85□□□□□ -0.35
Col6a1Q04857 Gm5870-201ENSMUST00000196461 282 ntBASIC12.85□□□□□ -0.35
Col6a1Q04857 Gm30978-201ENSMUST00000211581 1066 ntTSL 5 BASIC12.85□□□□□ -0.35
Col6a1Q04857 Gm2553-201ENSMUST00000215986 605 ntBASIC12.85□□□□□ -0.35
Col6a1Q04857 Gm18968-201ENSMUST00000221319 862 ntBASIC12.85□□□□□ -0.35
Col6a1Q04857 Gm14005-208ENSMUST00000223654 681 ntBASIC12.85□□□□□ -0.35
Col6a1Q04857 AC122346.3-201ENSMUST00000223983 306 ntBASIC12.85□□□□□ -0.35
Col6a1Q04857 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 C8g-202ENSMUST00000040042 1150 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Col6a1Q04857 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col6a1Q04857 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC12.84□□□□□ -0.35
Col6a1Q04857 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Col6a1Q04857 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Mir181d-201ENSMUST00000102383 72 ntBASIC12.84□□□□□ -0.35
Col6a1Q04857 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
Col6a1Q04857 Gm27390-201ENSMUST00000184516 176 ntBASIC12.84□□□□□ -0.35
Col6a1Q04857 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC12.84□□□□□ -0.35
Col6a1Q04857 Gm19087-201ENSMUST00000191430 946 ntBASIC12.84□□□□□ -0.35
Col6a1Q04857 Gm42816-201ENSMUST00000198433 325 ntBASIC12.84□□□□□ -0.35
Col6a1Q04857 Gm29763-201ENSMUST00000205306 616 ntBASIC12.84□□□□□ -0.35
Col6a1Q04857 1700086D15Rik-201ENSMUST00000020855 1092 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Col6a1Q04857 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Gm4811-201ENSMUST00000220879 1220 ntBASIC12.84□□□□□ -0.35
Col6a1Q04857 AC156568.1-201ENSMUST00000223018 712 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col6a1Q04857 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms