Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Scn11aQ9R053 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC13.58□□□□□ -0.23
Scn11aQ9R053 Gm15486-201ENSMUST00000135147 604 ntTSL 3 BASIC13.58□□□□□ -0.23
Scn11aQ9R053 Hoxd3os1-203ENSMUST00000145799 511 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Scn11aQ9R053 Gas5-224ENSMUST00000162558 502 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Scn11aQ9R053 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
Scn11aQ9R053 Mir7035-201ENSMUST00000184713 82 ntBASIC13.58□□□□□ -0.23
Scn11aQ9R053 Gm37197-201ENSMUST00000195607 401 ntBASIC13.58□□□□□ -0.23
Scn11aQ9R053 Gm42430-201ENSMUST00000197209 616 ntBASIC13.58□□□□□ -0.23
Scn11aQ9R053 CT025531.1-201ENSMUST00000214534 622 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Scn11aQ9R053 Capsl-202ENSMUST00000226688 739 ntBASIC13.58□□□□□ -0.23
Scn11aQ9R053 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Scn11aQ9R053 Gm43152-201ENSMUST00000202495 1638 ntBASIC13.58□□□□□ -0.24
Scn11aQ9R053 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Gm18806-201ENSMUST00000207607 1775 ntBASIC13.58□□□□□ -0.24
Scn11aQ9R053 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Gm8271-201ENSMUST00000171053 1469 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Kdm6bos-201ENSMUST00000129924 840 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Gm13026-201ENSMUST00000140113 608 ntTSL 5 BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Gm28038-201ENSMUST00000143119 378 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Gm9639-201ENSMUST00000172205 678 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Scn11aQ9R053 P4htm-204ENSMUST00000193621 1297 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Cox6b1-204ENSMUST00000208838 354 ntTSL 3 BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Gm45875-201ENSMUST00000212178 781 ntTSL 3 BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Gm6564-201ENSMUST00000075377 619 ntBASIC13.58□□□□□ -0.24
Scn11aQ9R053 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Scn11aQ9R053 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Gm14592-201ENSMUST00000117201 560 ntBASIC13.57□□□□□ -0.24
Scn11aQ9R053 Gm16217-201ENSMUST00000124182 616 ntTSL 3 BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Slc1a3-208ENSMUST00000157065 728 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Gm16165-201ENSMUST00000160140 795 ntBASIC13.57□□□□□ -0.24
Scn11aQ9R053 Vmn1r206-201ENSMUST00000187140 1135 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Gm4753-201ENSMUST00000188327 1255 ntBASIC13.57□□□□□ -0.24
Scn11aQ9R053 Gm44216-201ENSMUST00000203942 157 ntBASIC13.57□□□□□ -0.24
Scn11aQ9R053 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Uqcc3-201ENSMUST00000096253 829 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Gm42815-201ENSMUST00000198787 1470 ntBASIC13.57□□□□□ -0.24
Scn11aQ9R053 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Ccdc78-201ENSMUST00000095500 1651 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Scn11aQ9R053 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scn11aQ9R053 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Dcaf12-201ENSMUST00000030145 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Ankrd7-202ENSMUST00000115396 1157 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Gm11560-201ENSMUST00000117567 948 ntBASIC13.56□□□□□ -0.24
Scn11aQ9R053 Tnfrsf14-201ENSMUST00000123514 1018 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Gm12676-201ENSMUST00000149078 808 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Mir133a-1hg-201ENSMUST00000179771 395 ntTSL 3 BASIC13.56□□□□□ -0.24
Scn11aQ9R053 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC13.56□□□□□ -0.24
Scn11aQ9R053 Gm2448-201ENSMUST00000207080 559 ntBASIC13.56□□□□□ -0.24
Scn11aQ9R053 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 AC121357.1-201ENSMUST00000227365 608 ntBASIC13.56□□□□□ -0.24
Scn11aQ9R053 Tex101-201ENSMUST00000078001 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Nr1i3-201ENSMUST00000005820 1414 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 A230009B12Rik-202ENSMUST00000159602 1810 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scn11aQ9R053 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms