Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Dixdc1-203ENSMUST00000117646 5719 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Gm28719-201ENSMUST00000187779 1757 ntBASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 AC091458.1-201ENSMUST00000220902 1361 ntBASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Gm24891-201ENSMUST00000104391 136 ntBASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Gm3332-201ENSMUST00000189337 928 ntBASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Gm9136-201ENSMUST00000193368 454 ntBASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Gm44126-201ENSMUST00000204831 514 ntBASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Gm6905-201ENSMUST00000205729 511 ntBASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Gm4607-201ENSMUST00000206649 577 ntBASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Rims1-203ENSMUST00000097809 6179 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 AC171277.1-201ENSMUST00000216902 1441 ntBASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cdc40Q9DC48 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Gm40377-201ENSMUST00000204604 2015 ntBASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Epb41l1-201ENSMUST00000029155 6220 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Olfr46-203ENSMUST00000214180 7750 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Gm6580-201ENSMUST00000117504 1357 ntBASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Gm6114-201ENSMUST00000182472 968 ntBASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 AC125486.1-201ENSMUST00000218701 320 ntBASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Gm9826-201ENSMUST00000029124 1299 ntBASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Gm43760-201ENSMUST00000202120 3015 ntBASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Cdc40Q9DC48 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Cdc40Q9DC48 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC10.81□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms