Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Gm37600-201ENSMUST00000193764 3292 ntBASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Gm10774-201ENSMUST00000188689 204 ntBASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Gm37466-201ENSMUST00000195692 652 ntBASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Gm7395-201ENSMUST00000216059 1045 ntBASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 AC122891.1-201ENSMUST00000218671 268 ntBASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Gm38055-201ENSMUST00000195353 2217 ntBASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Atg4aQ8C9S8 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 n-R5s64-201ENSMUST00000102019 119 ntBASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Gm25148-201ENSMUST00000104611 123 ntBASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Gm44506-201ENSMUST00000206278 965 ntBASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Gm6653-201ENSMUST00000218063 1288 ntBASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Gm6722-201ENSMUST00000221586 390 ntBASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Atg4aQ8C9S8 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 AC155637.1-201ENSMUST00000218560 636 ntBASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Rassf8-202ENSMUST00000058538 1131 ntBASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Atg4aQ8C9S8 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms