Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
Trim28Q62318 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Trim28Q62318 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Trim28Q62318 Gm6322-201ENSMUST00000118789 1004 ntBASIC14.99□□□□□ -0.01
Trim28Q62318 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC14.99□□□□□ -0.01
Trim28Q62318 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC14.99□□□□□ -0.01
Trim28Q62318 Gm9116-201ENSMUST00000192400 1018 ntBASIC14.99□□□□□ -0.01
Trim28Q62318 Gm9369-201ENSMUST00000196009 733 ntBASIC14.99□□□□□ -0.01
Trim28Q62318 Gm9353-201ENSMUST00000200472 604 ntBASIC14.99□□□□□ -0.01
Trim28Q62318 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC14.99□□□□□ -0.01
Trim28Q62318 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC14.99□□□□□ -0.01
Trim28Q62318 Gm19817-201ENSMUST00000199764 2132 ntBASIC14.99□□□□□ -0.01
Trim28Q62318 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim28Q62318 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC14.98□□□□□ -0.01
Trim28Q62318 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Trim28Q62318 Gm2238-201ENSMUST00000192074 3669 ntBASIC14.98□□□□□ -0.01
Trim28Q62318 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Trim28Q62318 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC14.98□□□□□ -0.01
Trim28Q62318 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Gm9133-201ENSMUST00000118289 540 ntBASIC14.98□□□□□ -0.01
Trim28Q62318 Gm11422-201ENSMUST00000118925 1103 ntBASIC14.98□□□□□ -0.01
Trim28Q62318 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC14.98□□□□□ -0.01
Trim28Q62318 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Gm22846-201ENSMUST00000157706 270 ntBASIC14.98□□□□□ -0.01
Trim28Q62318 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC14.98□□□□□ -0.01
Trim28Q62318 Gm18776-201ENSMUST00000188833 654 ntBASIC14.98□□□□□ -0.01
Trim28Q62318 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Gm18514-201ENSMUST00000218980 436 ntBASIC14.98□□□□□ -0.01
Trim28Q62318 Gm7525-201ENSMUST00000219425 454 ntBASIC14.98□□□□□ -0.01
Trim28Q62318 Gm18968-201ENSMUST00000221319 862 ntBASIC14.98□□□□□ -0.01
Trim28Q62318 Id2-203ENSMUST00000222667 958 ntBASIC14.98□□□□□ -0.01
Trim28Q62318 AC122035.1-201ENSMUST00000227576 1016 ntBASIC14.98□□□□□ -0.01
Trim28Q62318 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Trim28Q62318 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Gm29295-201ENSMUST00000190004 1371 ntTSL 5 BASIC14.98□□□□□ -0.01
Trim28Q62318 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim28Q62318 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
Trim28Q62318 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Trim28Q62318 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Gm43152-201ENSMUST00000202495 1638 ntBASIC14.97□□□□□ -0.01
Trim28Q62318 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC14.97□□□□□ -0.01
Trim28Q62318 Gm14270-201ENSMUST00000118388 846 ntBASIC14.97□□□□□ -0.01
Trim28Q62318 Gm16397-201ENSMUST00000122201 494 ntBASIC14.97□□□□□ -0.01
Trim28Q62318 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC14.97□□□□□ -0.01
Trim28Q62318 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC14.97□□□□□ -0.01
Trim28Q62318 Gm25343-201ENSMUST00000157460 107 ntBASIC14.97□□□□□ -0.01
Trim28Q62318 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Trim28Q62318 Gm6771-201ENSMUST00000182716 1001 ntBASIC14.97□□□□□ -0.01
Trim28Q62318 Gm43695-201ENSMUST00000196545 196 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC14.97□□□□□ -0.01
Trim28Q62318 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Trim28Q62318 CT030653.1-201ENSMUST00000224382 1279 ntBASIC14.97□□□□□ -0.01
Trim28Q62318 AC099645.1-201ENSMUST00000226476 1105 ntBASIC14.97□□□□□ -0.01
Trim28Q62318 Gm5805-201ENSMUST00000072779 456 ntBASIC14.97□□□□□ -0.01
Trim28Q62318 Gm25517-201ENSMUST00000083865 134 ntBASIC14.97□□□□□ -0.01
Trim28Q62318 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Trim28Q62318 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Stk31-201ENSMUST00000024171 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Gm18798-201ENSMUST00000187264 1700 ntBASIC14.97□□□□□ -0.01
Trim28Q62318 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC14.97□□□□□ -0.01
Trim28Q62318 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Trim28Q62318 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim28Q62318 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms