Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Vti1aO89116 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Vti1aO89116 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Vti1aO89116 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Vti1aO89116 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Vti1aO89116 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Vti1aO89116 Pdgfra-202ENSMUST00000168162 6834 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Vti1aO89116 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Vti1aO89116 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Vti1aO89116 Arhgef3-204ENSMUST00000225949 3198 ntBASIC12.59□□□□□ -0.39
Vti1aO89116 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Vti1aO89116 Plekha6-204ENSMUST00000187285 5040 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Vti1aO89116 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Vti1aO89116 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Vti1aO89116 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Vti1aO89116 Dopey2-207ENSMUST00000227156 7340 ntBASIC12.58□□□□□ -0.4
Vti1aO89116 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Vti1aO89116 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
Vti1aO89116 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC12.58□□□□□ -0.4
Vti1aO89116 Gm15352-201ENSMUST00000118696 270 ntBASIC12.58□□□□□ -0.4
Vti1aO89116 Gm1848-201ENSMUST00000120711 789 ntBASIC12.58□□□□□ -0.4
Vti1aO89116 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC12.58□□□□□ -0.4
Vti1aO89116 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC12.58□□□□□ -0.4
Vti1aO89116 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC12.58□□□□□ -0.4
Vti1aO89116 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Gm23045-201ENSMUST00000175041 96 ntBASIC12.58□□□□□ -0.4
Vti1aO89116 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Gm19891-201ENSMUST00000189771 303 ntBASIC12.58□□□□□ -0.4
Vti1aO89116 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
Vti1aO89116 Gm6430-201ENSMUST00000054664 1248 ntBASIC12.58□□□□□ -0.4
Vti1aO89116 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC12.58□□□□□ -0.4
Vti1aO89116 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Gm43051-201ENSMUST00000201096 2678 ntBASIC12.58□□□□□ -0.4
Vti1aO89116 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Gm6189-201ENSMUST00000164487 2082 ntBASIC12.58□□□□□ -0.4
Vti1aO89116 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Zcwpw2-202ENSMUST00000187329 1469 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC12.58□□□□□ -0.4
Vti1aO89116 Ddah1-202ENSMUST00000120310 2291 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Vti1aO89116 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Ly75-201ENSMUST00000028362 5172 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vti1aO89116 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
Vti1aO89116 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 AC122291.1-201ENSMUST00000228937 5748 ntBASIC12.57□□□□□ -0.4
Vti1aO89116 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Klhl18-205ENSMUST00000198400 4638 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Vti1aO89116 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 AC169511.2-201ENSMUST00000226674 2063 ntBASIC12.57□□□□□ -0.4
Vti1aO89116 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Gm13910-201ENSMUST00000121752 1428 ntBASIC12.57□□□□□ -0.4
Vti1aO89116 n-R5s64-201ENSMUST00000102019 119 ntBASIC12.57□□□□□ -0.4
Vti1aO89116 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Vti1aO89116 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Gm11949-201ENSMUST00000117640 372 ntBASIC12.57□□□□□ -0.4
Vti1aO89116 Gm4993-201ENSMUST00000118719 1174 ntBASIC12.57□□□□□ -0.4
Vti1aO89116 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC12.57□□□□□ -0.4
Vti1aO89116 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC12.57□□□□□ -0.4
Vti1aO89116 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Vti1aO89116 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC12.57□□□□□ -0.4
Vti1aO89116 CT025551.1-201ENSMUST00000223996 692 ntBASIC12.57□□□□□ -0.4
Vti1aO89116 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Vti1aO89116 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Vti1aO89116 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
Vti1aO89116 Trim25-201ENSMUST00000000284 5566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vti1aO89116 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 59.7 ms