Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm18159-201ENSMUST00000174516 1070 ntBASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Olfr76-201ENSMUST00000087822 1048 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Gm11675-201ENSMUST00000121873 832 ntBASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Gm42518-201ENSMUST00000196277 938 ntBASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Nupl1-206ENSMUST00000225111 2936 ntBASIC12.63□□□□□ -0.39
Trim54Q9ERP3 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trim54Q9ERP3 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Gm6114-201ENSMUST00000182472 968 ntBASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Gm5982-201ENSMUST00000196234 512 ntBASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Gm44315-201ENSMUST00000203041 219 ntBASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 CT025551.1-201ENSMUST00000223996 692 ntBASIC12.62□□□□□ -0.39
Trim54Q9ERP3 AC102368.1-201ENSMUST00000227161 892 ntBASIC12.62□□□□□ -0.39
Trim54Q9ERP3 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim54Q9ERP3 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 55.2 ms