Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 AC165351.1-201ENSMUST00000219078 2020 ntBASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Gm6334-201ENSMUST00000207083 228 ntBASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Lect2-202ENSMUST00000225183 823 ntBASIC11.49□□□□□ -0.57
Lima1Q9ERG0 AC163667.3-201ENSMUST00000225774 222 ntBASIC11.49□□□□□ -0.57
Lima1Q9ERG0 AC154222.2-201ENSMUST00000225848 607 ntBASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Flad1-202ENSMUST00000107426 2238 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Gm42853-201ENSMUST00000201273 1387 ntBASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Tmem19-201ENSMUST00000092170 3012 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Mapkap1-209ENSMUST00000147337 3111 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lima1Q9ERG0 Derl2-206ENSMUST00000143850 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Gtf2a1-202ENSMUST00000063314 2265 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Rxra-206ENSMUST00000166775 3216 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Epb41l1-201ENSMUST00000029155 6220 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Gm15547-201ENSMUST00000122152 333 ntBASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC11.48□□□□□ -0.57
Lima1Q9ERG0 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Gm44711-201ENSMUST00000205414 1264 ntBASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Gm45865-201ENSMUST00000211815 945 ntBASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Gm37348-201ENSMUST00000193104 1789 ntBASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Gm43860-201ENSMUST00000201742 2705 ntBASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lima1Q9ERG0 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Pkp4-201ENSMUST00000037903 4378 ntTSL 5 BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Colec12-201ENSMUST00000040069 3322 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Plekhn1-204ENSMUST00000218699 3196 ntTSL 2 BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Cd276-201ENSMUST00000039788 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 G6pdx-201ENSMUST00000004327 2652 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 AC126257.1-201ENSMUST00000213195 1536 ntBASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Gm23270-201ENSMUST00000104055 131 ntBASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC11.47□□□□□ -0.57
Lima1Q9ERG0 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms