Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Gm9279-201ENSMUST00000223175 1606 ntBASIC13.72□□□□□ -0.21
Limch1Q3UH68 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC13.71□□□□□ -0.21
Limch1Q3UH68 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm10051-201ENSMUST00000145209 414 ntBASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm25881-201ENSMUST00000157783 103 ntBASIC13.71□□□□□ -0.21
Limch1Q3UH68 H2-Q3-201ENSMUST00000172583 608 ntBASIC13.71□□□□□ -0.21
Limch1Q3UH68 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm43002-201ENSMUST00000200310 155 ntBASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Limch1Q3UH68 AC122876.1-201ENSMUST00000217619 825 ntBASIC13.71□□□□□ -0.21
Limch1Q3UH68 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm10179-201ENSMUST00000086233 688 ntBASIC13.71□□□□□ -0.21
Limch1Q3UH68 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm37849-201ENSMUST00000194722 1881 ntBASIC13.71□□□□□ -0.21
Limch1Q3UH68 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Limch1Q3UH68 Gm6211-201ENSMUST00000147973 4275 ntBASIC13.71□□□□□ -0.22
Limch1Q3UH68 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Limch1Q3UH68 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Limch1Q3UH68 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Limch1Q3UH68 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Limch1Q3UH68 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Limch1Q3UH68 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Limch1Q3UH68 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Limch1Q3UH68 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Limch1Q3UH68 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC13.71□□□□□ -0.22
Limch1Q3UH68 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Limch1Q3UH68 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Limch1Q3UH68 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Limch1Q3UH68 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC13.7□□□□□ -0.22
Limch1Q3UH68 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Gm12196-201ENSMUST00000120954 262 ntBASIC13.7□□□□□ -0.22
Limch1Q3UH68 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Gm12208-201ENSMUST00000122004 163 ntBASIC13.7□□□□□ -0.22
Limch1Q3UH68 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC13.7□□□□□ -0.22
Limch1Q3UH68 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Gm4482-201ENSMUST00000200876 742 ntBASIC13.7□□□□□ -0.22
Limch1Q3UH68 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Gm44551-201ENSMUST00000208804 171 ntBASIC13.7□□□□□ -0.22
Limch1Q3UH68 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC13.7□□□□□ -0.22
Limch1Q3UH68 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC13.7□□□□□ -0.22
Limch1Q3UH68 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Gm1821-202ENSMUST00000227415 750 ntBASIC13.7□□□□□ -0.22
Limch1Q3UH68 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Limch1Q3UH68 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
Limch1Q3UH68 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms