Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Rfx1P48377 Gm38116-201ENSMUST00000193873 1533 ntBASIC13.88□□□□□ -0.19
Rfx1P48377 Gm36957-201ENSMUST00000192982 2824 ntBASIC13.88□□□□□ -0.19
Rfx1P48377 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
Rfx1P48377 Gm35850-202ENSMUST00000211705 2120 ntBASIC13.88□□□□□ -0.19
Rfx1P48377 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Rfx1P48377 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Rfx1P48377 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Rfx1P48377 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Rfx1P48377 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Rfx1P48377 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC13.88□□□□□ -0.19
Rfx1P48377 Gm10152-201ENSMUST00000193475 1344 ntBASIC13.88□□□□□ -0.19
Rfx1P48377 Gm6203-201ENSMUST00000209575 1342 ntBASIC13.88□□□□□ -0.19
Rfx1P48377 Prkd2-202ENSMUST00000168093 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Rfx1P48377 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Rfx1P48377 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC13.87□□□□□ -0.19
Rfx1P48377 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Gm44573-201ENSMUST00000191753 2370 ntBASIC13.87□□□□□ -0.19
Rfx1P48377 Synpr-201ENSMUST00000070323 2541 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Rfx1P48377 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Rfx1P48377 Plekhn1-204ENSMUST00000218699 3196 ntTSL 2 BASIC13.87□□□□□ -0.19
Rfx1P48377 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Rfx1P48377 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC13.87□□□□□ -0.19
Rfx1P48377 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Gm16140-201ENSMUST00000117191 1060 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC13.87□□□□□ -0.19
Rfx1P48377 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC13.87□□□□□ -0.19
Rfx1P48377 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC13.87□□□□□ -0.19
Rfx1P48377 Gm8712-201ENSMUST00000221090 701 ntBASIC13.87□□□□□ -0.19
Rfx1P48377 AC140406.1-201ENSMUST00000226481 465 ntBASIC13.87□□□□□ -0.19
Rfx1P48377 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Flad1-202ENSMUST00000107426 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC13.87□□□□□ -0.19
Rfx1P48377 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Rfx1P48377 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC13.87□□□□□ -0.19
Rfx1P48377 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Sod3-201ENSMUST00000101208 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Rfx1P48377 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Rfx1P48377 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Rfx1P48377 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Kcnab2-207ENSMUST00000160884 3922 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Rfx1P48377 Gm28719-201ENSMUST00000187779 1757 ntBASIC13.86□□□□□ -0.19
Rfx1P48377 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Rfx1P48377 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Gm43127-201ENSMUST00000195890 2789 ntBASIC13.86□□□□□ -0.19
Rfx1P48377 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Gtf3c1-201ENSMUST00000055506 6961 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Rfx1P48377 Gm11424-201ENSMUST00000121929 829 ntBASIC13.86□□□□□ -0.19
Rfx1P48377 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC13.86□□□□□ -0.19
Rfx1P48377 Gm4607-201ENSMUST00000206649 577 ntBASIC13.86□□□□□ -0.19
Rfx1P48377 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
Rfx1P48377 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Rfx1P48377 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC13.86□□□□□ -0.19
Rfx1P48377 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Dixdc1-203ENSMUST00000117646 5719 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Rfx1P48377 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Rfx1P48377 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 AC159195.3-201ENSMUST00000225162 2211 ntBASIC13.86□□□□□ -0.19
Rfx1P48377 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Tfip11-201ENSMUST00000031288 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Rfx1P48377 Baiap3-206ENSMUST00000182825 3862 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Rfx1P48377 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Rfx1P48377 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 58 ms