Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Gm4310-201ENSMUST00000177847 889 ntBASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Gm6082-201ENSMUST00000215204 454 ntBASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Gm7964-201ENSMUST00000051522 1378 ntBASIC13.3□□□□□ -0.28
Trim11Q99PQ2 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC13.3□□□□□ -0.28
Trim11Q99PQ2 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm37931-201ENSMUST00000194686 2866 ntBASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm11509-201ENSMUST00000117358 325 ntBASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm18038-201ENSMUST00000197900 485 ntBASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm45433-201ENSMUST00000209386 247 ntBASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm26448-201ENSMUST00000082446 203 ntBASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm45677-201ENSMUST00000209975 1341 ntBASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm13347-201ENSMUST00000120298 1353 ntBASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Gm9072-201ENSMUST00000218390 1514 ntBASIC13.29□□□□□ -0.28
Trim11Q99PQ2 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Gm14130-201ENSMUST00000118417 987 ntBASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Gm11439-201ENSMUST00000118598 409 ntBASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Mir7677-201ENSMUST00000184226 67 ntBASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Mir8093-201ENSMUST00000185043 137 ntBASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Gm5869-201ENSMUST00000200248 1257 ntBASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Gm7172-201ENSMUST00000218047 1152 ntBASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Gm270-201ENSMUST00000223010 976 ntBASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Trim11Q99PQ2 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 99.2 ms