Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Gm43267-201ENSMUST00000199664 1796 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Riok3-201ENSMUST00000025270 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 AC169511.2-201ENSMUST00000226674 2063 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Pck2-201ENSMUST00000048781 3400 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Hpcal4-201ENSMUST00000059667 4931 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Gm24255-201ENSMUST00000104481 128 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Gm15198-201ENSMUST00000117283 177 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Gm14723-201ENSMUST00000118686 215 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Gm32999-201ENSMUST00000192693 562 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Gm43179-201ENSMUST00000198797 275 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Gm45331-201ENSMUST00000209868 554 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 CT571245.2-201ENSMUST00000218421 305 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 AC125350.2-201ENSMUST00000224737 727 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Gm6015-201ENSMUST00000217493 1586 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Gm19165-201ENSMUST00000204453 1982 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Gm19692-201ENSMUST00000203856 2084 ntBASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 4931406C07Rik-201ENSMUST00000034414 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ccdc40Q8BI79 Sla2-202ENSMUST00000109561 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Dcun1d2-203ENSMUST00000110839 2937 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Chd7-206ENSMUST00000170391 3462 ntTSL 5 BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Bmp3-203ENSMUST00000200388 6609 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Gm15276-201ENSMUST00000145953 498 ntBASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Gm37447-201ENSMUST00000195625 2928 ntBASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Gm44152-201ENSMUST00000205007 1691 ntBASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Gm44651-201ENSMUST00000207343 372 ntBASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Gm13097-201ENSMUST00000210722 397 ntBASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Foxp1-201ENSMUST00000074346 2118 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 AC154314.2-201ENSMUST00000223677 3502 ntBASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Anks1b-216ENSMUST00000182430 3305 ntTSL 5 BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Tor4a-201ENSMUST00000081869 3255 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Shc1-210ENSMUST00000191485 3154 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Slc6a9-202ENSMUST00000063857 3146 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ccdc40Q8BI79 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Lao1-201ENSMUST00000058651 2349 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Gm5766-201ENSMUST00000160520 1977 ntBASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Ccdc40Q8BI79 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms