Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Gm12286-201ENSMUST00000119246 1002 ntBASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Ighv5-7-201ENSMUST00000192302 244 ntBASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Gm42660-201ENSMUST00000197733 947 ntBASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Gm45433-201ENSMUST00000209386 247 ntBASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Ccl25-201ENSMUST00000024004 1058 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Prss57-203ENSMUST00000169684 2841 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Sh3rf1Q69ZI1 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Gm16481-201ENSMUST00000119074 1227 ntBASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Gm11331-201ENSMUST00000119764 288 ntBASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Gm6963-201ENSMUST00000147879 379 ntBASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Gm24749-201ENSMUST00000157838 343 ntBASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Gm28882-201ENSMUST00000185504 314 ntBASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 BC043934-202ENSMUST00000185694 2356 ntBASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 A530030E21Rik-201ENSMUST00000199551 1310 ntBASIC11.86□□□□□ -0.51
Sh3rf1Q69ZI1 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Gm14716-201ENSMUST00000120138 718 ntBASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Gm43378-201ENSMUST00000199336 582 ntBASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Gm43947-201ENSMUST00000203019 959 ntBASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Gm18515-201ENSMUST00000219755 797 ntBASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Gm10076-201ENSMUST00000073238 384 ntBASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Gm21136-201ENSMUST00000186812 2575 ntBASIC11.85□□□□□ -0.51
Sh3rf1Q69ZI1 Gm6605-201ENSMUST00000031488 2574 ntBASIC11.85□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms