Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Gm19459-201ENSMUST00000176240 835 ntBASIC13.74□□□□□ -0.21
Limch1Q3UH68 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Gm44126-201ENSMUST00000204831 514 ntBASIC13.74□□□□□ -0.21
Limch1Q3UH68 Gm44545-201ENSMUST00000208262 746 ntBASIC13.74□□□□□ -0.21
Limch1Q3UH68 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Mir680-2-201ENSMUST00000102163 110 ntBASIC13.73□□□□□ -0.21
Limch1Q3UH68 Gm23251-201ENSMUST00000103773 110 ntBASIC13.73□□□□□ -0.21
Limch1Q3UH68 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Gm27438-201ENSMUST00000183480 110 ntBASIC13.73□□□□□ -0.21
Limch1Q3UH68 Mir7677-201ENSMUST00000184226 67 ntBASIC13.73□□□□□ -0.21
Limch1Q3UH68 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC13.73□□□□□ -0.21
Limch1Q3UH68 AC154849.4-201ENSMUST00000224868 365 ntBASIC13.73□□□□□ -0.21
Limch1Q3UH68 AC133602.1-201ENSMUST00000227510 509 ntBASIC13.73□□□□□ -0.21
Limch1Q3UH68 Gm5705-201ENSMUST00000066241 711 ntBASIC13.73□□□□□ -0.21
Limch1Q3UH68 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Limch1Q3UH68 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Gm13812-201ENSMUST00000118061 1347 ntBASIC13.72□□□□□ -0.21
Limch1Q3UH68 Gm13810-201ENSMUST00000118584 1347 ntBASIC13.72□□□□□ -0.21
Limch1Q3UH68 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Gm12501-201ENSMUST00000119163 529 ntBASIC13.72□□□□□ -0.21
Limch1Q3UH68 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC13.72□□□□□ -0.21
Limch1Q3UH68 Gm14665-201ENSMUST00000122294 557 ntBASIC13.72□□□□□ -0.21
Limch1Q3UH68 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Gm43830-201ENSMUST00000198760 1067 ntBASIC13.72□□□□□ -0.21
Limch1Q3UH68 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Limch1Q3UH68 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms