Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Gm15610-201ENSMUST00000120584 195 ntBASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Gm14441-201ENSMUST00000121960 540 ntBASIC11.36□□□□□ -0.59
Col28a1Q2UY11 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 B9d1os-201ENSMUST00000137010 674 ntBASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Gm37580-201ENSMUST00000192408 2800 ntBASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col28a1Q2UY11 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC11.36□□□□□ -0.59
Col28a1Q2UY11 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Pnpla6-212ENSMUST00000208002 4444 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gm11700-201ENSMUST00000119409 403 ntBASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gm9678-201ENSMUST00000198979 1149 ntBASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gm19963-201ENSMUST00000208413 1255 ntBASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gm18615-201ENSMUST00000222919 1031 ntBASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gm807-202ENSMUST00000224929 408 ntBASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Btrc-209ENSMUST00000224478 2194 ntBASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Atp6v1a-201ENSMUST00000063661 3896 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col28a1Q2UY11 Gm17281-201ENSMUST00000180732 3589 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
Col28a1Q2UY11 AC154314.2-201ENSMUST00000223677 3502 ntBASIC11.34□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms