Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cux1P53564 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Cux1P53564 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cux1P53564 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cux1P53564 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC17.69■□□□□ 0.42
Cux1P53564 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 AC157950.1-201ENSMUST00000217561 2168 ntBASIC17.68■□□□□ 0.42
Cux1P53564 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 Fas-202ENSMUST00000112472 555 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 2210406O10Rik-203ENSMUST00000149687 1198 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 Gm25226-201ENSMUST00000158198 123 ntBASIC17.68■□□□□ 0.42
Cux1P53564 Fxyd5-203ENSMUST00000159924 805 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
Cux1P53564 Fxyd5-210ENSMUST00000162116 817 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
Cux1P53564 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC17.68■□□□□ 0.42
Cux1P53564 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Cux1P53564 BC106175-202ENSMUST00000219344 1213 ntBASIC17.68■□□□□ 0.42
Cux1P53564 CT010480.2-201ENSMUST00000225424 737 ntBASIC17.68■□□□□ 0.42
Cux1P53564 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC17.68■□□□□ 0.42
Cux1P53564 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC17.68■□□□□ 0.42
Cux1P53564 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cux1P53564 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Cux1P53564 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC17.68■□□□□ 0.42
Cux1P53564 Gm6158-201ENSMUST00000109467 904 ntBASIC17.67■□□□□ 0.42
Cux1P53564 Ube2d-ps-201ENSMUST00000121354 441 ntBASIC17.67■□□□□ 0.42
Cux1P53564 Gm22344-201ENSMUST00000122642 278 ntBASIC17.67■□□□□ 0.42
Cux1P53564 Gm14718-201ENSMUST00000138082 752 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Gm13802-201ENSMUST00000150159 663 ntTSL 3 BASIC17.67■□□□□ 0.42
Cux1P53564 Nmbr-207ENSMUST00000190751 921 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Gm43966-201ENSMUST00000203301 612 ntBASIC17.67■□□□□ 0.42
Cux1P53564 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC17.67■□□□□ 0.42
Cux1P53564 Ctrl-201ENSMUST00000034368 879 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Gm8894-201ENSMUST00000074642 666 ntBASIC17.67■□□□□ 0.42
Cux1P53564 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
Cux1P53564 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Cfap61-201ENSMUST00000116398 1561 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Lrp2bp-201ENSMUST00000066451 1525 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Cux1P53564 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Ces2f-203ENSMUST00000212926 1430 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Cux1P53564 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC17.67■□□□□ 0.42
Cux1P53564 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Gm10614-201ENSMUST00000181414 2538 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Cux1P53564 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC17.67■□□□□ 0.42
Cux1P53564 Lrrc75aos2-202ENSMUST00000128647 1227 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Rp9-204ENSMUST00000216973 796 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
Cux1P53564 Elob-201ENSMUST00000069579 508 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cux1P53564 Mir326-201ENSMUST00000083637 95 ntBASIC17.67■□□□□ 0.42
Cux1P53564 n-R5s71-201ENSMUST00000093668 119 ntBASIC17.67■□□□□ 0.42
Cux1P53564 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Cux1P53564 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC17.66■□□□□ 0.42
Cux1P53564 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Cux1P53564 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Cux1P53564 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Ifitm1-202ENSMUST00000106040 560 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Cux1P53564 Ifitm1-203ENSMUST00000106042 882 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Gm13008-201ENSMUST00000142289 507 ntTSL 5 BASIC17.66■□□□□ 0.42
Cux1P53564 Gm25604-201ENSMUST00000158359 133 ntBASIC17.66■□□□□ 0.42
Cux1P53564 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Gm3233-201ENSMUST00000168997 693 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Cux1P53564 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Cux1P53564 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC17.66■□□□□ 0.42
Cux1P53564 Gm45388-201ENSMUST00000209922 1132 ntTSL 5 BASIC17.66■□□□□ 0.42
Cux1P53564 AC165249.1-202ENSMUST00000217990 734 ntTSL 3 BASIC17.66■□□□□ 0.42
Cux1P53564 AC169511.1-201ENSMUST00000227639 995 ntBASIC17.66■□□□□ 0.42
Cux1P53564 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Ifitm1-201ENSMUST00000026564 736 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Nnmt-201ENSMUST00000034808 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Gm9758-201ENSMUST00000035980 1167 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Acot13-201ENSMUST00000006900 721 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 4930572O03Rik-201ENSMUST00000092696 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms