Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tex10-206ENSMUST00000164866 3203 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Myo1h-210ENSMUST00000202006 4631 ntAPPRIS P2 TSL 5 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Mkl1-204ENSMUST00000134469 4392 ntTSL 5 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Olfr374-202ENSMUST00000210435 8718 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Dlgap1-214ENSMUST00000155016 4712 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Col4a5-201ENSMUST00000112930 6285 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Olfr1219-205ENSMUST00000217421 5849 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Krba1-201ENSMUST00000031815 3685 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Acin1-203ENSMUST00000111484 4048 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Nlrp6-201ENSMUST00000106045 3823 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Tsc22d4-202ENSMUST00000100539 3983 ntAPPRIS P2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Gm36957-201ENSMUST00000192982 2824 ntBASIC9.62□□□□□ -0.87
Hmgb3O54879 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Tram2-201ENSMUST00000037998 6492 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Map2-206ENSMUST00000114017 4981 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 2610005L07Rik-202ENSMUST00000140111 4009 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Gm44405-201ENSMUST00000198952 126 ntBASIC9.62□□□□□ -0.87
Hmgb3O54879 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Arhgap32-206ENSMUST00000182802 5621 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Gm18986-201ENSMUST00000216029 1986 ntBASIC9.62□□□□□ -0.87
Hmgb3O54879 Rxra-206ENSMUST00000166775 3216 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Nrip3-201ENSMUST00000033331 3910 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Cyp26b1-205ENSMUST00000205228 4288 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Pla2g4c-201ENSMUST00000043612 3382 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Caprin1-202ENSMUST00000111147 4069 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Rxfp2-206ENSMUST00000201612 2470 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Il1r1-201ENSMUST00000027241 5819 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Rad51ap2-201ENSMUST00000124065 3175 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Gm10548-201ENSMUST00000097631 2629 ntBASIC9.62□□□□□ -0.87
Hmgb3O54879 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Emc1-202ENSMUST00000082262 6226 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Ctnnd1-209ENSMUST00000111678 5870 ntTSL 5 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Hmgb3O54879 Myo9a-203ENSMUST00000128341 11985 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Gm21969-201ENSMUST00000178644 4402 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Hmgb3O54879 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC9.61□□□□□ -0.87
Hmgb3O54879 Atg14-202ENSMUST00000226299 3729 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
Hmgb3O54879 Scml4-201ENSMUST00000063063 4885 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Slc23a2-201ENSMUST00000028815 6364 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Gm44152-201ENSMUST00000205007 1691 ntBASIC9.61□□□□□ -0.87
Hmgb3O54879 Hif1an-201ENSMUST00000040455 6194 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Plec-208ENSMUST00000080857 14959 ntTSL 5 BASIC9.61□□□□□ -0.87
Hmgb3O54879 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC9.61□□□□□ -0.87
Hmgb3O54879 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Nfasc-202ENSMUST00000094569 9739 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 AC154314.2-201ENSMUST00000223677 3502 ntBASIC9.61□□□□□ -0.87
Hmgb3O54879 Spata13-201ENSMUST00000022566 7517 ntAPPRIS P3 TSL 5 BASIC9.61□□□□□ -0.87
Hmgb3O54879 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC9.61□□□□□ -0.87
Hmgb3O54879 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC9.61□□□□□ -0.87
Hmgb3O54879 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC9.61□□□□□ -0.87
Hmgb3O54879 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC9.61□□□□□ -0.87
Hmgb3O54879 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC9.61□□□□□ -0.87
Hmgb3O54879 Gm45668-201ENSMUST00000211271 493 ntBASIC9.61□□□□□ -0.87
Hmgb3O54879 Gm39404-201ENSMUST00000216350 313 ntBASIC9.61□□□□□ -0.87
Hmgb3O54879 AC125206.2-201ENSMUST00000217454 574 ntBASIC9.61□□□□□ -0.87
Hmgb3O54879 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC9.61□□□□□ -0.87
Hmgb3O54879 Oplah-201ENSMUST00000023222 3970 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Trp53inp2-201ENSMUST00000043237 3979 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
Hmgb3O54879 Rsf1-201ENSMUST00000107153 11124 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
Hmgb3O54879 Mapkap1-209ENSMUST00000147337 3111 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 181.4 ms