Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Trim3Q9R1R2 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Trim3Q9R1R2 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim3Q9R1R2 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm16570-201ENSMUST00000161951 436 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm5616-201ENSMUST00000165252 384 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm8741-201ENSMUST00000174736 384 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm29615-201ENSMUST00000185371 697 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm28224-201ENSMUST00000186078 697 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm29001-201ENSMUST00000186177 697 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm28292-201ENSMUST00000186593 697 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm28101-201ENSMUST00000187608 697 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm29076-201ENSMUST00000187689 697 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm28302-201ENSMUST00000187931 697 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm28646-201ENSMUST00000188220 697 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm28205-201ENSMUST00000189177 697 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm29032-201ENSMUST00000189797 697 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm28695-201ENSMUST00000190300 697 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm37448-201ENSMUST00000192795 697 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 AY036118-201ENSMUST00000200021 923 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Trim3Q9R1R2 Fam53a-203ENSMUST00000065162 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Trim3Q9R1R2 AC093022.4-203ENSMUST00000228523 2657 ntBASIC11.02□□□□□ -0.64
Trim3Q9R1R2 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Trim3Q9R1R2 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Trim3Q9R1R2 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Trim3Q9R1R2 AC108858.2-201ENSMUST00000228186 1425 ntBASIC11.02□□□□□ -0.64
Trim3Q9R1R2 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Trim3Q9R1R2 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Trim3Q9R1R2 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC11.02□□□□□ -0.64
Trim3Q9R1R2 Gm44152-201ENSMUST00000205007 1691 ntBASIC11.02□□□□□ -0.64
Trim3Q9R1R2 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Trim3Q9R1R2 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Trim3Q9R1R2 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Gm12164-201ENSMUST00000121695 551 ntBASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
Trim3Q9R1R2 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC11.02□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms