Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm5706-201ENSMUST00000181525 993 ntBASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm26956-201ENSMUST00000182176 986 ntBASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm6621-201ENSMUST00000193251 772 ntBASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm43630-201ENSMUST00000201550 776 ntBASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm9368-201ENSMUST00000219348 831 ntBASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 CT025533.2-201ENSMUST00000228715 1248 ntBASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Crot-201ENSMUST00000003720 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm38273-201ENSMUST00000194987 2382 ntBASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Lima1Q9ERG0 Gm29358-202ENSMUST00000187941 3227 ntBASIC11.52□□□□□ -0.56
Lima1Q9ERG0 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Lima1Q9ERG0 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Lima1Q9ERG0 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Lima1Q9ERG0 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
Lima1Q9ERG0 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Gm30285-201ENSMUST00000214614 422 ntBASIC11.52□□□□□ -0.57
Lima1Q9ERG0 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 D830039M14Rik-202ENSMUST00000217740 3362 ntBASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Lima1Q9ERG0 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lima1Q9ERG0 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC11.51□□□□□ -0.57
Lima1Q9ERG0 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Lima1Q9ERG0 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Lima1Q9ERG0 Cd6-202ENSMUST00000039043 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms