Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Smc1aQ9CU62 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Smc1aQ9CU62 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC13.14□□□□□ -0.31
Smc1aQ9CU62 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smc1aQ9CU62 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smc1aQ9CU62 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Retreg1-206ENSMUST00000228306 1430 ntBASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Gm43860-201ENSMUST00000201742 2705 ntBASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Gm45532-201ENSMUST00000210342 3620 ntBASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Gm17230-201ENSMUST00000171194 3942 ntBASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Gm23699-201ENSMUST00000158835 135 ntBASIC13.13□□□□□ -0.31
Smc1aQ9CU62 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Gm28071-201ENSMUST00000190355 478 ntBASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 AC153506.1-201ENSMUST00000218768 2915 ntBASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Smc1aQ9CU62 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Gm12380-201ENSMUST00000119012 544 ntBASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Gm7467-201ENSMUST00000185173 652 ntBASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 AC159205.5-202ENSMUST00000224849 386 ntBASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Gm10371-202ENSMUST00000228010 1081 ntBASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Smc1aQ9CU62 AC122291.1-201ENSMUST00000228937 5748 ntBASIC13.12□□□□□ -0.31
Smc1aQ9CU62 Gm40377-201ENSMUST00000204604 2015 ntBASIC13.12□□□□□ -0.31
Smc1aQ9CU62 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Btrc-209ENSMUST00000224478 2194 ntBASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Gm23949-201ENSMUST00000104027 127 ntBASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Gm15711-201ENSMUST00000118889 535 ntBASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Mir7032-201ENSMUST00000185154 79 ntBASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 AC141438.2-201ENSMUST00000215068 271 ntBASIC13.11□□□□□ -0.31
Smc1aQ9CU62 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Smc1aQ9CU62 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC13.11□□□□□ -0.31
Smc1aQ9CU62 AC135114.1-201ENSMUST00000228682 270 ntBASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms